From: HANDS: a tool for genome-wide discovery of subgenome- specific base-identity in polyploids
Chromosome 1 | Chromosome 5 | |||||
---|---|---|---|---|---|---|
A | B | D | A | B | D | |
HSP positions | 32,993 | 32,993 | 32,993 | 40,783 | 40,783 | 40,783 |
Positions ignored | 4,669 | 5,540 | 4,205 | 6,230 | 7,284 | 4,420 |
Diploid coverage low | 831 | 1,318 | 523 | 969 | 1,768 | 753 |
Diploid ambiguous | 45 | 202 | 59 | 60 | 1,095 | 77 |
NT unassigned | 2,627 | 2,627 | 2,627 | 2,866 | 2,866 | 2,866 |
Sub genome silenced | 1,166 | 1,393 | 996 | 2,335 | 1,555 | 724 |
Position considered | 28,324 | 27,453 | 28,788 | 34,553 | 33,499 | 36,363 |
Correct assignment | 27,268 (96.27%) | 25,746 (93.78%) | 28,185 (97.91%) | 33,371 (96.58%) | 31,448 (93.88%) | 35,565 (97.81%) |
Incorrect assignment | 882 (3.11%) | 1,252 (4.56%) | 470 (1.63%) | 966 (2.80%) | 1,518 (4.53%) | 598 (1.64%) |
No assignment | 174 (0.61%) | 455 (1.66%) | 133 (0.46%) | 216 (0.63%) | 533 (1.59%) | 200 (0.55%) |