Table 3 Protein and conserved splicing attributes, numbers of proteins in evaluation dataset for splicing conservation satisfying different conditions
From: Comparison of RefSeq protein-coding regions in human and vertebrate genomes
Organism | Number of proteins | All coding exons aligned | 1-to-1 mapping between exons | All exons have 90% overlap | All exons have length +/− 15 | Proteins with > =3 coding exons | All splice junctions aligned |
|---|---|---|---|---|---|---|---|
Mouse | 15511 | 14275 | 13638 | 11074 | 10422 | 13451 | 10639 |
Cow | 13418 | 11581 | 10697 | 9073 | 8572 | 11680 | 8407 |
Zebrafish | 4617 | 3385 | 2900 | 1264 | 1307 | 4155 | 1805 |