Table 3 DNA methylation at CHH sites in AHB and EHB
From: Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees
AHB CHH modifications by genetic region | |||
|---|---|---|---|
Type (alphabetical order) | Analyzed | Methylated | Methylated % |
Cds | 3,316,927 | 26,207 | 0.79% |
Downstream | 5,075,583 | 79,404 | 1.56% |
Exon | 3,316,927 | 26,207 | 0.79% |
Gene | 12,684,330 | 212,020 | 1.67% |
Intergenic | 16,317,387 | 325,139 | 1.99% |
Intron | 9,480,307 | 186,385 | 1.97% |
SpliceSiteAcceptor | 14,774 | 87 | 0.59% |
SpliceSiteDonor | 26,957 | 121 | 0.45% |
Transcript | 13,795,281 | 234,094 | 1.70% |
Upstream | 5,213,214 | 74,112 | 1.42% |
EHB CHH modifications by genetic region | |||
Type (alphabetical order) | Analyzed | Methylated | Methylated % |
Cds | 3,648,122 | 85,111 | 2.33% |
Downstream | 5,967,723 | 216,950 | 3.64% |
Exon | 3,648,122 | 85,111 | 2.33% |
Gene | 14,525,454 | 521,600 | 3.59% |
Intergenic | 19,011,050 | 773,971 | 4.07% |
Intron | 10,997,021 | 438,582 | 3.99% |
SpliceSiteAcceptor | 17,187 | 538 | 3.13% |
SpliceSiteDonor | 34,121 | 620 | 1.82% |
Transcript | 15,784,142 | 570,790 | 3.62% |
Upstream | 6,096,005 | 211,100 | 3.46% |