Table 4 DNA methylation at CHG sites in AHB and EHB
From: Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees
AHB CHG methylation by genetic region | |||
|---|---|---|---|
Type (alphabetical order) | Analyzed | Methylated | Methylated % |
Cds | 1,002,706 | 3,493 | 0.35% |
Downstream | 1,119,219 | 4,559 | 0.41% |
Exon | 1,002,706 | 3,493 | 0.35% |
Gene | 3,188,727 | 11,619 | 0.36% |
Intergenic | 3,777,833 | 14,009 | 0.37% |
Intron | 2,225,532 | 8,217 | 0.37% |
SpliceSiteAcceptor | 16,858 | 43 | 0.26% |
SpliceSiteDonor | 4,407 | 15 | 0.34% |
Transcript | 3,470,589 | 12,577 | 0.36% |
Upstream | 1,189,498 | 4,526 | 0.38% |
EHB CHG methylation by genetic region | |||
Type (alphabetical order) | Analyzed | Methylated | Methylated % |
Cds | 1,059,063 | 11,898 | 1.12% |
Downstream | 1,242,115 | 16,772 | 1.35% |
Exon | 1,059,063 | 11,898 | 1.12% |
Gene | 3,419,998 | 37,559 | 1.10% |
Intergenic | 4,099,352 | 45,117 | 1.10% |
Intron | 2,401,495 | 25,966 | 1.08% |
SpliceSiteAcceptor | 18,474 | 257 | 1.39% |
SpliceSiteDonor | 5,072 | 57 | 1.12% |
Transcript | 3,718,898 | 40,695 | 1.09% |
Upstream | 1,308,187 | 16,511 | 1.26% |