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Table 5 Pvu-seq and HMeDIP-seq results show that cytosine hydroxymethylation is enriched in introns in the honey bee genome

From: Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees

Pvu-seq AHB

  

Type (alphabetical order)

Count

Percent

Downstream

114,800

10.50%

Exon

138,670

12.68%

Intergenic

367,126

33.58%

Intragenic

1,542

0.14%

Intron

245,458

22.45%

Splice_Site_Acceptor

46,519

4.25%

Splice_Site_Donor

46,039

4.21%

Upstream

133,265

12.19%

Pvu-seq EHB

  

Type (alphabetical order)

Count

Percent

Downstream

277,098

10.80%

Exon

312,968

12.20%

Intergenic

852,968

33.25%

Intragenic

3,332

0.13%

Intron

592,529

23.10%

Splice_Site_Acceptor

107,318

4.18%

Splice_Site_Donor

108,663

4.24%

Upstream

310,213

12.09%

HMeDIP-seq AHB

  

Type (alphabetical order)

Count

Percent

Downstream

2,255

10.98%

Gene

2,537

12.35%

Intergenic

6,312

30.72%

Intron

4,487

21.84%

None

2

0.01%

Splice_Site_Acceptor

1,343

6.54%

Splice_Site_Donor

1,373

6.68%

Upstream

2,238

10.89%