Skip to main content

Table 2 Selected 3’untranslated regions (3'UTRs)

From: RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

RNA feature Start Stop Length Upstream gene Antisense genes NPKM value*
BLi_r0075 198675 198433 243 citM   127
BLi_r0671 919040 918595 446 ygzB perR1 50
BLi_r0688 938151 938591 441 BLi00936   496
BLi_r0817 1054694 1054523 172 msmX BLi01051 75
BLi_r0859 1099760 1099445 316 ynzH yhfE 2310
BLi_r0949 1209837 1210136 300 BLi01196   188
BLi_r1013 1278149 1277370 780 cotZ fabI, cotO 116
BLi_r1145 1465905 1468238 2334 ykoM ykoU, ykoV 264
BLi_r1333 1655028 1654895 134 ylaL   195
BLi_r1357 1680492 1679988 505 ylbP gerR 62
BLi_r1521 2008172 2008031 142 BLi02067   224
BLi_r1720 2216049 2215342 708 odhB yocS 41
BLi_r1750 2244661 2244519 143 yodL yoyE 16
BLi_r1797 2291386 2291184 203 ypbQ   268
BLi_r1927 2463046 2465026 1981 BLi02544 BLi02545,ymaC 213
BLi_r1985 2537707 2537586 122 mntR   151
BLi_r1995 2550986 2550862 125 tasA   482
BLi_r2041 2606579 2606461 119 cccA   431
BLi_r2067 2662102 2661914 189 BLi02768 yrhD 87
BLi_r2141 2741955 2741415 541 yrzI   348
BLi_r2152 2754987 2754859 129 yrzB   140
BLi_r2178 2787395 2787201 195 yrbF   1520
BLi_r2292 2952407 2952263 145 pyk   520
BLi_r2582 3255915 3256420 506 yutI yuxL 324
BLi_r2620 3292613 3292481 133 sufB   405
BLi_r2654 3332662 3328698 3965 liaR gerAA, gerAB, gerAC, BLi03491 11
BLi_r2700 3398622 3398373 250 copA   166
BLi_r2729 3427607 3428159 553 BLi05033   345
BLi_r2752 3464447 3464713 267 BLi03635   286
BLi_r2855 3591778 3591637 142 cccB   80
  1. *(pooled RNA-Seq data).
\