Figure 3From: V-Phaser 2: variant inference for viral populationsAn illustration of consensus base recalculation between reference positions ( i −3) and ( i +2) using read alignment information. The alignment of 7 reads (r0,r1,…,r6) with respect to the reference genomic positions is given. ci−3,i−2 and ci−2,i−1 denote insertions. Deletions are denoted by “-”s. Each type of length polymorphism is circulated by a blank rectangular. Recalculated single nucleotide consensus (SNC) and length polymorphic consensus (LPC) are shown below the alignment, where each dot denotes that the corresponding consensus base will not be considered.Back to article page