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Figure 3 | BMC Genomics

Figure 3

From: V-Phaser 2: variant inference for viral populations

Figure 3

An illustration of consensus base recalculation between reference positions ( i −3) and ( i +2) using read alignment information. The alignment of 7 reads (r0,r1,…,r6) with respect to the reference genomic positions is given. ci−3,i−2 and ci−2,i−1 denote insertions. Deletions are denoted by “-”s. Each type of length polymorphism is circulated by a blank rectangular. Recalculated single nucleotide consensus (SNC) and length polymorphic consensus (LPC) are shown below the alignment, where each dot denotes that the corresponding consensus base will not be considered.

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