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Table 4 Characterizing falsely inferred LPVs in 8-mix Illumina MiSeq data

From: V-Phaser 2: variant inference for viral populations

Reference

Inferred LPV

Consensus

LPV

Strand bias

position

count (+, -)

count (+, -)

frequency

p-value

4115

IA (86, 86)

(2131, 2013)

4.15%

0.72

5172

IA (12, 20)

(1632, 2149)

0.85%

0.52

6203

IA (64, 40)

(2494, 2123)

2.25%

0.13

8294

IG (21, 14)

(1923, 1625)

0.99%

0.49

9063

IA (22, 16)

(2054, 2074)

0.92%

0.35

  1. (+, -) denote the positive and negative strands. ‘I’ denotes the LPV is an insertion.
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BMC Genomics

ISSN: 1471-2164

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