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Table 1 Differentially expressed genes in Ponkan mandarin in response to infection by X. fastidiosa

From: RNA-Seq analysis of Citrus reticulata in the early stages of Xylella fastidiosa infection reveals auxin-related genes as a defense response

Gene symbol

gene id_Citrus clementina*

AGI**

Fold change***

P ≤ 0.001

Gene description

LRR-RLK

Ciclev10004108m

AT4G08850

1.05611

0.000755101

leucine-rich repeat family protein

LRR-RLK

Ciclev10014130m

AT3G47570

2.64522

3.84525e-09

leucine-rich repeat protein kinase family protein

RLP12

Ciclev10003540m

AT1G71400

1.20144

2.69007e-06

receptor like protein 12

CC-NBS-LRR

Ciclev10007304m

AT4G27190

1.29361

4.28293e-06

nb-arc domain-containing disease resistance protein

MYB domain

Ciclev10012089m

AT2G37630

1.35348

0.000930383

as1 (asymmetric leaves 1); transcription factor

MYO

Ciclev10010780m

AT4G33200

2.76714

0.000191443

myosin, putative

MYB66

Ciclev10017556m

AT5G14750

1.05408

1.04467e-07

myb domain protein 66); transcription factor

PAL

Ciclev10030821m

AT2G37040

0.91583

2.53552e-07

phenylalanine ammonia-lyase

GSL07

Ciclev10030560m

AT1G06490

1.0981

2.36835e-05

glucan synthase-like 7

CSLA09

Ciclev10031284m

AT5G03760

1.33401

1.33936e-07

cellulose synthase like A9

CESA8

Ciclev10014155m

AT4G18780

1.27949

6.74384e-08

cellulose synthase

CESA4

Ciclev10018639m

AT5G44030

1.15575

7.36883e-05

cellulose synthase

ATFXG1

Ciclev10031741m

AT1G67830

-0.940316

1.02739e-05

alpha-L-fucosidase/ carboxylesterase

#

Ciclev10020423m

AT4G24780

-1.03748

3.74844e-06

pectate lyase family protein

#

Ciclev10030947m

AT1G70370

-1.27505

1.32952e-06

BURP domain-containing protei

QRT2

Ciclev10005317m

AT3G07970

-1.57918

4.63421e-06

QRT2; polygalacturonase

#

Ciclev10004783m

AT1G04680

-1.68649

1.5906e-05

pectate lyase family protein

LOX

Ciclev10014202m

AT3G45140

0.99318

0.000466003

lipoxygenase 2

NCED6

Ciclev10006710m

AT3G24220

2.69285

1.90022e-09

nine-cis-epoxycarotenoid dioxygenase 6

CCD7

Ciclev10027500m

AT2G44990

0.93434

0.00201556

carotenoid clevage dioxygenase 7

AP2

Ciclev10010403m

AT1G51120

2.21376

5.89723e-07

ap2 domain-containing transcription factor, putative

AIP2

Ciclev10008969m

AT5G20910

-1.33947

4.99589e-07

zinc finger (c3hc4-type ring finger) family protein

IAA9

Ciclev10025873m

AT5G65670

2.26201

0.0033

indole-3-acetic acid inducible 9

E3 RING

Ciclev10005027m

AT2G30580

1.46874

1.05377e-05

ubiquitin-protein ligase

HECT (UPL5)

Ciclev10014213m

AT4G12570

1.41737

6.03935e-06

ubiquitin protein ligase 5

E3/SCF/FBOX (LKP1)

Ciclev10007762m

AT5G57360

0.98971

0.00243897

ubiquitin-protein ligase

ARF-GAP DOMAIN 8

Ciclev10011983m

AT4G17890

0.87335

0.00250141

arf gtpase activator

ARF8

Ciclev10014200m

AT5G37020

0.83349

0.00155566

transcription factor

ARF19

Ciclev10007286m

AT1G19220

1.17169

0.000240451

transcription factor

BIG

Ciclev10010885m

AT3G02260

0.62707

0.000252397

auxin transport protein (big)

XTH16

Ciclev10005561m

AT3G23730

-0,983574

5.04445e-07

xyloglucan endotransglycosylase, putative

EXGT-A4

Ciclev10028851m

AT5G13870

-1,37398

5.49438e-11

engoxyloglucan transferase A4

ATEXPA4

Ciclev10012518m

AT2G39700

-1,99214

0.000463125

expansin A4

  1. * Citrus clementina transcripts identification number (reference genome used for mapping the reads) - http://www.phytozome.org/search.php.
  2. ** Identification number of the Arabidopsis thaliana ortholog of up and down-regulated citrus gene in response to X. fastidiosa infection (The Arabidopsis Genome Initiative).
  3. *** Log2 fold change values (P ≤ 0.001) obtained from of each infected sample compared to mock-inoculated control.
  4. # unnamed gene symbol.
  5. Up and downregulated genes in Ponkan mandarin 24 h after infection with X. fastidiosa compared with the control.