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Table 2 Defense-genes upregulated in Ponkan mandarin in response to X. fastidiosa infection

From: RNA-Seq analysis of Citrus reticulata in the early stages of Xylella fastidiosa infection reveals auxin-related genes as a defense response

Gene symbol

Gene id_Citrus clementina*

AGI**

Fold change***

P ≤ 0.001

Gene description

#

Ciclev10000095m

AT1G20760

0.872938

0.000738646

calcium-binding EF hand family protein

CPK21

Ciclev10014823m

AT4G04720

0.731932

0.0054887

calmodulin-dependent protein kinase

#

Ciclev10032932m

AT1G64850

0.600133

0.0256525

calcium-binding EF hand family protein

#

Ciclev10014139m

AT5G46070

0.882012

0.046128

GTP binding / GTPase

ATMIN7

Ciclev10007246m

AT3G43300

0.625071

0.030625

guanyl-nucleotide exchange factor/ protein binding

#

Ciclev10020496m

AT5G50120

0.617877

0.00757447

WD-40 repeat family protein

PER17

Ciclev10026073m

AT2G22420

0.88525

0.0376681

peroxidase 17

#

Ciclev10026072m

AT4G33420

0.559908

0.00032072

peroxidase, putative

MAP9

Ciclev10021170m

AT1G73500

0.567652

0.000807898

MAP kinase kinase 9

EMB3004

Ciclev10000874m

AT3G06350

1.0645

0.00113401

shikimate dehydrogenase, putative

HSP70

Ciclev10027981m

AT3G12580

1.2447

4.22995e-12

heat shock protein 70

HSP17

Ciclev10009756m

AT5G12020

1.62260

0.00

17.6 kda class II heat shock protein

HSP90

Ciclev10004456m

AT5G52640

1.63013

9.87432e-13

heat shock protein 90.1

DNAJ

Ciclev10028792m

AT4G39150

1.01887

0.00183666

dnaJ heat shock N-terminal domain-containing protein

HPT1

Ciclev10008336m

AT2G18950

2.40936

2.24863e-10

homogentisate phytyltransferase 1

P450

Ciclev10014861m

AT4G12320

1.56043

0.000237455

cytochrome P450, family 706, subfamily A, polypeptide 6

TAU8

Ciclev10005809m

AT3G09270

1.86905

1.54321e-08

glutathione S-transferase TAU 8

UDP-glycosyltransferase

Ciclev10025462m

AT3G50740

1.139

1.72708e-07

udp-glucosyl transferase 72E1

CHIA

Ciclev10005491m

AT5G24090

1.02503

0.00135025

chitinase A

TRYPSIN

Ciclev10022001m

AT1G17860

1.32418

2.00905e-06

trypsin and protease inhibitor family protein

  1. * Citrus clementina transcripts identification number (reference genome used for mapping the reads) - http://www.phytozome.org/search.php
  2. ** Identification number of the Arabidopsis thaliana ortholog of up and down-regulated citrus gene in response to X. fastidiosa infection (The Arabidopsis Genome Initiative).
  3. *** Log2 fold change values (P ≤ 0.001) obtained from of each infected sample compared to mock-inoculated control.
  4. # unnamed gene symbol.
  5. Upregulated genes in Ponkan mandarin 24 h after infection with X. fastidiosa compared with the control.