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Table 2 Overview and classification of the repeats present in the ‘Pahang’ (Musa A) and ‘Pisang Klutuk Wulung’ (PKW, Musa B) genomes

From: “A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids”

  Musa A Musa B
  ‘Pahang’ PKW
Class Count Bp % Count Bp %
Ty1/Copia 5,606 3,158,199 0.67% 5,616 2,760,972 0.69%
copia/Angela 3,2073 20,697,639 4.38% 32,056 19,380,064 4.81%
Copia/SIRE1Maximus 90,910 62,820,929 13.28% 97,868 49,333,251 12.26%
Copia/Tnt1 4,191 5,137,617 1.09% 4,377 4,320,053 1.07%
Ty3/Gypsy 6,236 6,717,506 1.42% 6,542 5,554,874 1.38%
Gypsy/CRM 1,051 1,124,528 0.24% 973 1,016,030 0.25%
Gypsy/Galadriel 1,992 2,997,110 0.63% 2,244 2,739,827 0.68%
Gypsy/Galadriel-lineage 1 28 0.00% 2 296 0.00%
Gypsy/Reina 16,445 11,955,226 2.53% 15,882 10,331,187 2.57%
Gypsy/Tekay 9,234 7,545,095 1.60% 9,245 5,851,644 1.45%
LINE 2,868 1,824,495 0.39% 2,544 1,580,226 0.39%
RE 14,494 5,415,085 1.14% 13,794 3,525,005 0.88%
Satellite/Type1 274 523,572 0.11% 299 484,199 0.12%
Satellite/Type2 68 103,955 0.02% 41 24,429 0.01%
clDNA 2,434 517,168 0.11% 2,491 487,816 0.12%
DNA/hAT 1,952 764,792 0.16% 1,818 675,712 0.17%
Total 189,829 131,302,944 27.76% 195,792 108,065,585 26.85%