Table 2 Overview and classification of the repeats present in the ‘Pahang’ (Musa A) and ‘Pisang Klutuk Wulung’ (PKW, Musa B) genomes

Ty1/Copia

5,606

3,158,199

0.67%

5,616

2,760,972

0.69%

copia/Angela

3,2073

20,697,639

4.38%

32,056

19,380,064

4.81%

Copia/SIRE1Maximus

90,910

62,820,929

13.28%

97,868

49,333,251

12.26%

Copia/Tnt1

4,191

5,137,617

1.09%

4,377

4,320,053

1.07%

Ty3/Gypsy

6,236

6,717,506

1.42%

6,542

5,554,874

1.38%

Gypsy/CRM

1,051

1,124,528

0.24%

973

1,016,030

0.25%

Gypsy/Galadriel

1,992

2,997,110

0.63%

2,244

2,739,827

0.68%

Gypsy/Galadriel-lineage

1

28

0.00%

2

296

0.00%

Gypsy/Reina

16,445

11,955,226

2.53%

15,882

10,331,187

2.57%

Gypsy/Tekay

9,234

7,545,095

1.60%

9,245

5,851,644

1.45%

LINE

2,868

1,824,495

0.39%

2,544

1,580,226

0.39%

RE

14,494

5,415,085

1.14%

13,794

3,525,005

0.88%

Satellite/Type1

274

523,572

0.11%

299

484,199

0.12%

Satellite/Type2

68

103,955

0.02%

41

24,429

0.01%

clDNA

2,434

517,168

0.11%

2,491

487,816

0.12%

DNA/hAT

1,952

764,792

0.16%

1,818

675,712

0.17%

Total

189,829

131,302,944

27.76%

195,792

108,065,585

26.85%