Table 7 overview of RNA-transcript read coverage distribution per chromosome following mapping to the combined A- and B-genomes
Sequence Name | Reference length/bp | Normalised mapped transcripts count | |||||||
|---|---|---|---|---|---|---|---|---|---|
CDS | Unigenes | Ygi | GM | Mbk | Btd | Iho | Karat | ||
A_chr1 | 27,573,629 | 76.5 | 75.7 | 79.1 | 71.4 | 54.6 | 52.9 | 54.9 | 47.0 |
A_chr2 | 22,054,697 | 63.7 | 59.4 | 57.4 | 53.5 | 40.9 | 40.5 | 39.7 | 30.0 |
A_chr3 | 30,470,407 | 89.6 | 85.6 | 90.7 | 81.6 | 62.8 | 60.7 | 61.9 | 50.1 |
A_chr4 | 30,051,516 | 92.5 | 90.0 | 88.6 | 81.9 | 63.1 | 61.7 | 57.8 | 45.3 |
A_chr5 | 29,377,369 | 81.6 | 75.6 | 76.9 | 69.7 | 53.9 | 56.3 | 53.3 | 42.4 |
A_chr6 | 34,899,179 | 100.7 | 103.2 | 102.2 | 92.0 | 73.1 | 70.4 | 71.0 | 54.8 |
A_chr7 | 28,617,404 | 75.6 | 75.1 | 74.9 | 68.7 | 24.5 | 25.3 | 49.8 | 37.8 |
A_chr8 | 35,439,739 | 94.1 | 90.3 | 98.8 | 86.5 | 69.4 | 68.0 | 68.7 | 51.8 |
A_chr9 | 34,148,863 | 84.6 | 79.3 | 80.6 | 76.2 | 60.0 | 57.3 | 64.2 | 43.6 |
A_chr10 | 33,665,772 | 86.6 | 88.2 | 83.9 | 75.9 | 68.7 | 67.9 | 60.5 | 42.7 |
A_chr11 | 25,514,024 | 73.1 | 67.1 | 70.0 | 64.6 | 49.0 | 47.3 | 50.9 | 34.7 |
A_chrUn_random | 141,147,818 | 79.7 | 51.6 | 58.1 | 51.3 | 37.7 | 37.8 | 50.4 | 31.7 |
B_chr1 | 22,038,404 | 0.3 | 4.4 | 3.1 | 10.4 | 29.6 | 32.1 | 32.7 | 42.1 |
B_chr2 | 17,349,238 | 0.1 | 3.8 | 2.3 | 7.6 | 22.4 | 24.1 | 23.2 | 29.6 |
B_chr3 | 24,161,952 | 0.3 | 4.8 | 3.7 | 11.8 | 33.5 | 35.4 | 34.4 | 47.6 |
B_chr4 | 24,656,528 | 0.1 | 4.9 | 3.5 | 11.1 | 28.5 | 29.2 | 35.1 | 43.4 |
B_chr5 | 23,648,591 | 0.1 | 5.2 | 3.0 | 10.6 | 27.2 | 28.0 | 29.7 | 41.7 |
B_chr6 | 27,831,592 | 0.2 | 5.9 | 4.4 | 13.9 | 36.4 | 36.2 | 36.1 | 47.6 |
B_chr7 | 22,212,853 | 0.1 | 5.9 | 3.9 | 10.2 | 61.5 | 59.6 | 28.8 | 39.2 |
B_chr8 | 27,665,716 | 0.1 | 6.6 | 2.8 | 12.2 | 25.6 | 26.3 | 24.6 | 46.3 |
B_chr9 | 25,900,723 | 0.1 | 5.9 | 3.8 | 10.8 | 21.8 | 23.0 | 4.7 | 41.4 |
B_chr10 | 25,230,959 | 0.1 | 4.1 | 3.8 | 11.6 | 10.0 | 10.8 | 22.2 | 43.5 |
B_chr11 | 20,721,546 | 0.1 | 4.8 | 2.5 | 9.0 | 24.3 | 26.9 | 26.5 | 35.6 |
B_chrUn_random | 141,147,818 | 0.2 | 2.7 | 2.1 | 7.6 | 21.6 | 22.1 | 18.9 | 30.2 |
% A | 54.0 | 99.8 | 94.1 | 96.1 | 87.3 | 65.8 | 64.6 | 68.3 | 51.2 |
% B | 46.0 | 0.2 | 5.9 | 3.9 | 12.7 | 34.2 | 35.4 | 31.7 | 48.8 |