Typing Method
a
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
Strain
|
B31
| 1 | 1 | 1 | 1 | 1 | 1 | 1/2 | A |
64b
| 3b | 1 | 1 | 1 | 1 | 1 | 1/2 | A |
Bol26
| 1 | – | 3 | 1 | 1 | 1 | 1/2 | A |
ZS7
| 1 | 1 | 3 | 1 | 1 | 1 | 1/2 | A |
156a
| 2 | 2 | 2 | 2 | 2 | 2a | 2/1 | D |
297
| 2 | 2 | – | 2 | 2 | 2b | – | Dc |
JD1
| 5 | 1 | 6 | 3 | 2 | 2c | 2/1 | D |
72a
| 4 | 2 | 4 | 3 | 3 | 3a | 1/1 | C |
94a
| 8b | 3 | 4 | 3 | 3 | 3a | 1/1 | C |
118a
| 5 | 2 | 4 | 3 | 3 | 3b | 1/1 | C |
CA-11.2A
| 5 | 2 | 2 | 3 | 3 | 3a | 1/– | C |
N40
| 9 | 3 | 5 | 3 | 4 | 4 | 2/2 | B |
WI91-23
| 7 | 2 | 4 | 3 | 5 | 4 | 2/1 | B |
29805
| 6 | 3 | 7 | 3 | 6 | 4 | 1/1 | B |
- a. Chromosomal typing methods are as follows:
- 1. Ribosomal rRNA spacer IGS 1 [35, 37].
- 2. Arbitrary MLST group name [33, 38].
- 3. Arbitrary MLST group name (Figure 1 this report).
- 4. RST type deduced from our sequences [67, 68].
- 5. Plasmid content similarity, arbitrary group name (S. Casjens, unpublished).
- 6. Chromosomal right end organization, arbitrary group name (S. Casjens, unpublished).
- 7. Two chromosomal indels: 157 bp in gene 0021 and 27–30 bp between genes 0001 and 0002 (1 = no deletion; 2= deletion).
- 8. Chromosomal, cp26 and lp54 SNP type, this report.
- - not determined.
- b. IGS 1 lineages 1 and 3 form a coherent superlineage, and IGS 1 8 is a rather close relative of lineage IGS 1 5 [35].
- c. 297 chromosomal SNP type not determined.