Table 1 Respective performance of the different methods against reference dataset of 30 Archaeal genomes
BLAST search (E < 10e-5) | HMM search (p < 10e-5) | Repeats search | IRs search | |
|---|---|---|---|---|
Number of different ISs | 190 | 187 | 125 | 67 |
Number of different ISs > 2 copies | 115 | 120 (+4,3%) | 125 (+8.7%) | 67 (-47,8%) |
Number of different MITEs | 26 | 26 (+0%) | 39 (+50%) | 39(+50%) |
False positives | 0 | 11 | 99 | 0 |