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Table 1 Respective performance of the different methods against reference dataset of 30 Archaeal genomes

From: Improving prokaryotic transposable elements identification using a combination of de novo and profile HMM methods

  BLAST search (E < 10e-5) HMM search (p < 10e-5) Repeats search IRs search
Number of different ISs 190 187 125 67
Number of different ISs > 2 copies 115 120 (+4,3%) 125 (+8.7%) 67 (-47,8%)
Number of different MITEs 26 26 (+0%) 39 (+50%) 39(+50%)
False positives 0 11 99 0