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Table 1 Illumina sequencing of poly-A + RNA enriched fraction identifies new nitrate responsive genes

From: Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots

AGI identifier

Description

log2 (KNO3/KCl)

AT5G63160

BT1, BTB and TAZ domain protein 1

5.2

AT1G11655

Unknown protein

4.3

AT5G65030

Unknown protein

4.2

AT1G70260

nodulin MtN21 /EamA-like transporter family protein

4.0

AT2G33550

Homeodomain-like superfamily protein

3.7

AT1G68238

Unknown protein

3.7

AT4G34419

Unknown protein

3.6

AT1G02030

C2H2-like zinc finger protein

3.1

AT4G34800

SAUR-like auxin-responsive protein family

3.0

AT5G03330

Cysteine proteinases superfamily protein

2.9

AT1G60050

Nodulin MtN21 /EamA-like transporter family protein

2.9

AT2G45760

BAL, BAP2, BON association protein 2

2.8

AT1G70800

Calcium-dependent lipid-binding (CaLB domain) family protein

2.8

AT4G29905

Unknown protein

2.7

AT3G22942

AGG2, G-protein gamma subunit 2

2.2

AT1G23149

CPuORF29, conserved peptide upstream open reading frame 29

2.2

AT1G23150

Unknown protein

2.2

AT5G65980

Auxin efflux carrier family protein

2.2

AT3G14260

Protein of Unknown function (DUF567)

2.1

AT3G48180

Unknown protein

2.1

AT3G25717

DVL6, RTFL16, ROTUNDIFOLIA like 16

2.1

AT2G41440

Unknown protein

2.1

AT1G13245

DVL4, RTFL17, ROTUNDIFOLIA like 17

2.0

AT1G68825

DVL5, RTFL15, ROTUNDIFOLIA like 15

2.0

AT5G58320

Kinase interacting (KIP1-like) family protein

2.0

AT3G29034

Unknown protein

1.9

AT1G22882

Galactose-binding protein

1.6

AT4G04745

Unknown protein

1.6

AT4G09180

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

1.3

AT1G45249

ABF2, abscisic acid responsive elements-binding factor 2

1.3

AT5G38200

Class I glutamine amidotransferase-like superfamily protein

1.2

AT2G18193

P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.2

AT5G10200

ARM-repeat/Tetratricopeptide repeat (TPR)-like protein

1.2

AT5G52882

P-loop containing nucleoside triphosphate hydrolases superfamily protein

0.9

AT2G31141

Unknown protein

0.8

AT3G48340

Cysteine proteinases superfamily protein

−1.0

AT2G23790

Protein of Unknown function (DUF607)

−1.2

AT1G52120

Mannose-binding lectin superfamily protein

−1.5

AT4G39795

Protein of Unknown function (DUF581)

−1.9

AT3G06550

O-acetyltransferase family protein

−2.0

  1. Reads were mapped to the Arabidopsis genome and regulated genes were determined using DESeq. We identified protein coding genes that were not represented on the Affymetrix ATH1 microarray. We show the log2(KNO3/KCl) value for 2 biological replicates.