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Table 4 Polymorphic SSR primer pairs derived from P. alba unigenes

From: De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba

Primer name

Marker ID name gene bank accession no.

Motif

ORF

Primer sequence 5´-3´

Amplicon Lenght

Seq description

I-P00930b

isotig00930b

acc (5)

Y

F:GCAACAGCACTGCTTCAAA

260-268

Zinc finger protein magpie-like

R:AAAATAGCGCCATAGTTTGCTC

I-P00930c

isotig00930c

gtc (4)

Y

F:TATGGCGCTATTTTTGGAGG

236-240

Zinc finger protein magpie-like

R: TCATGCTCCTCACAATCTGC

I-P00930d

isotig00930d

aac (6)

Y

F:TCGAGATTTTCTTGGGGTTG

176-178

Zinc finger protein magpie-like

R: AAATTCCCTCCTCCTCCAAA

I-P03211

isotig03211a

aat (4)

Y

F: TTGCTTCAGAAAGCTGCTCA

190-198

Uncharacterized protein loc100815794

R: AACCCTCGAAGATGATGGTG

I-P03325a

isotig03325a

ca (5)

N

F: CGTGCATGAATGTCACAGAC

226-230

Peroxidase

R:AGGGTGAGATCAGAAGGCAA

I-P06286b

isotig06286b

tc (5)

N

F:TGACAACCCATCTTCTTCTTCA

206-216

Myb transcription factor myb138

R:ATTTGCACAAGGGTAAAGATGG

I-P06639

isotig06639a

at (5)

N

F: CATCCCGTTCAAGTCCAAGT

226-230

Aquaporin pip11

R: AGCCCCCTTCCAACTTCTAA

I-P07653

isotig07653a

gtt (4)

Y

F: AGTGATGATTCGGATCCTGG

216-220

zf-hd homeobox protein

R:GAGAGACGAGGACTTGGTGC

I-P10500

Isotig10500a

ttc (6)

N

F: CTCCGACAGATTCAGCATCA

260-275

Pentatricopeptide repeat-containing protein

R: TTCTTTCAAACTCGCCATCA

S-P1DKSFA

GR7D2IN01DKSFA

ttta (3)

N

F: GTTTACCCATTGCAGGTCGT

162-168

Calcium-binding mitochondrial carrier protein s −1

R: CCCCATATGCAGAATCACCT

S-P1EPIV2

GR7D2IN01EPIV2

taa (4)

N

F: TAAGCATTCATAGCCAGCCC

290-298

Peroxidase 73

    

R: GACCAGGTCCTGTTTACCGA

  
  1. The included data are: primer names, marker ID names, motif and number of repeats, position in ORF, forward and reverse primer sequences (5´3´), amplicon length (bp), BLASTX similarity matches (Putative Function).