Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology

BMC Genomics

Table 2 Statistics of contigs assembled from the experiment data from D. melanogaster

Dataset	Program	Total length	Mean	N50	N90
Illumina paired-end short reads from the nonisogenic w¹¹¹⁸ line	anytag	127,234,490	55,151	190,040	31,389
	ABySS	140,898,203	2,848	35,179	3,958
	MSR-CA	150,524,058	4,421	17,210	2,055
	soap	132,954,582	1,270	4,705	536
	velvet	Out of memory
454 long reads from 3 isogenic lines ^a	Newbler	123,157,508 ~ 128,620,384	5,197 ~ 6,896	33,241 ~ 75,801	2,367 ~ 5,621
20X PS reads ^b	anytag	121,492,910	29,698	104,623	16,587

ISSN: 1471-2164