Table 2 Trans -encoded sRNA genes with overlapping RNAz- prediction (p ≥ 0.9) and their prediction details
From: Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicumATCC 13032
New locus tag | Strand | Sequencing start | Sequencing stop | Adjacent genes | RNAz Prediction start | RNAz Prediction end | RNAz max. p-score |
|---|---|---|---|---|---|---|---|
cgb_00105 | - | 10053 | 9921 | cg0010(-)/cg0012(-) | 10073 | 9921 | 0.95 |
cgb_00925 | + | 74286 | 74320 | cg0092(+)/cg0095(+) | 74297 | 74476 | 0.99 |
cgb_03505 | - | 307582 | 307548 | cg0350(-)/cg0352(-) | 307558 | 307474 | 0.95 |
a cgb_03605 | + | 314679 | 314787 | cg0360(-)/cg0362(+) | 314611 | 314792 | 0.99 |
cgb_03995 | - | 346945 | 346882 | cg0399(-)/cg0400(-) | 346922 | 346590 | 0.96 |
cgb_05085 | + | 452359 | 452408 | cg0508(-)/cg0510(+) | 452321 | 452622 | 0.99 |
cgb_05716 | + | 509744 | 509990 | cg0571(+)/cg0572(+) | 509724 | 509981 | 0.99 |
cgb_05756 | + | 512702 | 512814 | cg0575(+)/cg0576(+) | 512744 | 512906 | 0.99 |
cgb_08496 | + | 782757 | 782836 | cg0849(+)/cg0850(+) | 782647 | 782889 | 0.99 |
cgb_08785 | - | 807467 | 807331 | cg0878(-)/cg0879(+) | 807563 | 807292 | 0.92 |
cgb_09095 | - | 842812 | 842715 | cg0909(-)/cg0910(-) | 842945 | 842791 | 0.97 |
cgb_09097 | - | 842983 | 842911 | cg0909(-)/cg0910(-) | 842945 | 842791 | 0.97 |
b cgb_09185 | + | 848500 | 848922 | cg0918(+)/cg0919(+) | 848444 | 848993 | 0.90 |
cgb_09483 | + | 878863 | 878996 | cg0948(-)/cg0949(+) | 878852 | 879125 | 0.99 |
cgb_13305 | - | 1237440 | 1237333 | cg1330(+)/cg1332(-) | 1237507 | 1237208 | 0.90 |
cgb_14495 | + | 1351975 | 1352041 | cg1449(+)/cg1451(+) | 1351833 | 1352246 | 0.99 |
cgb_17355 | - | 1626662 | 1626596 | cg1735(-)/cg1736(-) | 1626885 | 1626583 | 0.95 |
cgb_17735 | + | 1665705 | 1665791 | cg1773(-)/cg1774(+) | 1665657 | 1665835 | 0.99 |
cgb_17805 | - | 1672717 | 1672673 | cg1780(+)/cg1781(-) | 1672744 | 1672565 | 0.92 |
cgb_18405 | - | 1734383 | 1734304 | cg1840(-)/cg1841(-) | 1734440 | 1734264 | 0.99 |
cgb_18415 | - | 1736390 | 1736347 | cg1841(-)/cg1842(+) | 1736478 | 1736333 | 0.96 |
cgb_21516 | - | 2039580 | 2039466 | cg2151(-)/cg2152(-) | 2039656 | 2039493 | 0.98 |
cgb_21673 | - | 2055867 | 2055764 | cg2167(-)/cg2168(-) | 2055929 | 2055750 | 0.99 |
cgb_22185 | - | 2108839 | 2108800 | cg2218(-)/cg2221(-) | 2109027 | 2108748 | 0.98 |
cgb_22215 | - | 2110108 | 2109924 | cg2221(-)/cg2222(-) | 2110102 | 2109913 | 0.99 |
cgb_22285 | - | 2116294 | 2116236 | cg2228(-)/cg2229(-) | 2116297 | 2115998 | 0.96 |
cgb_22405 | - | 2124418 | 2124384 | cg2240(+)/cg2241(-) | 2124504 | 2124285 | 0.92 |
cgb_23783 | - | 2267593 | 2267546 | cg2378(-)/cg2380(-) | 2267720 | 2267551 | 0.93 |
cgb_24455 | - | 2331195 | 2331116 | cg2445(-)/cg2446(-) | 2331257 | 2331109 | 0.99 |
c cgb_24535 | - | 2343003 | 2342592 | cg2453(-)/cg2455(-) | 2343050 | 2342650 | 0.95 |
cgb_24775 | - | 2362678 | 2362640 | cg2477(-)/cg2478(-) | 2362704 | 2362548 | 0.94 |
cgb_25636 | + | 2447380 | 2447441 | cg2563(+)/cg2564(-) | 2447231 | 2447490 | 0.94 |
cgb_25955 | - | 2476453 | 2476419 | cg2595(-)/cg2597(-) | 2476484 | 2476295 | 0.92 |
cgb_26475 | - | 2530082 | 2530004 | cg2647(-)/cg2648(+) | 2530150 | 2529972 | 0.91 |
cgb_28315 | + | 2693243 | 2693292 | cg2831(-)/cg2833(+) | 2692958 | 2693349 | 0.99 |
cgb_28685 | - | 2730160 | 2730126 | cg2868(+)/cg2869(-) | 2730432 | 2730065 | 0.97 |
cgb_29606 | - | 2816731 | 2816535 | cg2960(+)/cg2962(-) | 2816711 | 2816532 | 0.99 |
cgb_30116 | - | 2863994 | 2863960 | cg3011(-)/cg3012(-) | 2864045 | 2863846 | 0.95 |
cgb_30685 | - | 2928726 | 2928634 | cg3068(-)/cg3069(-) | 2928804 | 2928585 | 0.99 |
cgb_31375 | - | 2997519 | 2997485 | cg3137(-)/cg3138(+) | 2997679 | 2997500 | 0.94 |
cgb_31785 | - | 3041252 | 3041154 | cg3178(-)/cg3179(-) | 3041427 | 3041124 | 0.97 |
cgb_33045 | - | 3156331 | 3156287 | cg3304(-)/cg3306(-) | 3156621 | 3156254 | 0.91 |
cgb_33325 | + | 3179928 | 3180066 | cg3332(-)/cg3334(+) | 3179728 | 3180003 | 0.99 |
cgb_34325 | - | 3282122 | 3282086 | cg3432(-)/cg3434(+) | 3282124 | 3281877 | 0.95 |