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Figure 2 | BMC Genomics

Figure 2

From: De novo transcriptome profiling uncovers a drastic downregulation of photosynthesis upon nitrogen deprivation in the nonmodel green alga Botryosphaerella sudeticus

Figure 2

Characteristics of the B. sudeticus transcriptome. A total of 56 thousand ESTs is assembled based on 53 million paired-end reads (90 bp in length), of which, ~7,600 ESTs were annotated. (A) Length distribution of all ESTs. X- and Y-axis indicate the binned EST length and the number of ESTs in each bin, respectively. (B) Level distribution of all ESTs. Levels are normalized to RPKM. X- and Y-axis indicate the binned EST level (in RPKM) and the number of ESTs in each bin, respectively. (C) List of GO-terms that are associated with ESTs annotations. Top 10 GO-terms in each category are shown. X-axis indicates the GO-terms and Y-axis indicates the number of ESTs associated with the GO-terms. BP, CC, and MF stand for biological process, cellular component, and molecular function, respectively. (D) List of KEGG metabolic pathways that are associated with ESTs annotations. Top 30 metabolic pathways are listed. The display is identical to (C).

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BMC Genomics

ISSN: 1471-2164

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