Skip to main content

Table 3 Distribution of prophages in the genomes sequenced in this study

From: Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types

Prophage

Virulence genes

Function

Strain (phage type)

L796 (DT99)

L847 (DT197)

L852 (DT135a)

L904 (DT9)

L945 (DT108)

L927 (DT12a)

Fels-1

nanH

Neuraminidase

-

+

-

-

-

-

sodCIII

Putative Cu/Zn superoxide dismutase

Gifsy-1

gogA

Similar to pipA in SPI5

+

+

+

+

+

+

gipA

Effector proteins for enhanced growth in Peyer’s patches

gogB

Similar to type III secretion protein

gogD

Similar to pagK

sopE2*

pagK, mig-3, pagO, sopE2loci

Invasion-associated effectors that activate different sets of RhoGTPases of the host cell

+

+

+

+

+

+

sspH2*

sspH2

SPI-2 type III secretion system

+

+

+

+

+

+

Gifsy-2

sodCI

Periplasmic Cu/Zn superoxide dismutase

+

+

+

+

+

+

sopE

SPI-1-dependent translocated effector protein

gtgE

Cytoplasmic protein

sseI

Secreted effector protein

gtgF

Similar to macrophage survival gene (msgA)

grvA

Antivirulence gene

ST64B

sseK

Type III secreted effector protein

-

+

+

+

+

-

Fels-2

N/A†

 

-

-

-

+

-

-

ST104

artAB

ADP-ribosyl transferase toxin homologue

-

-

-

-

-

+

CP4-57

N/A

 

-

-

+

-

-

-

  1. *Prophage remnant.
  2. †NA - Not applicable.