Table 4 Insertion and deletion locations relative to S. enterica serovar Typhimurium LT2 detected from the six genomes sequenced in this study
Genome (Phage type) | LT2 location | Deletion size (bp) | Affected gene | Gene function | Gene truncation (%)/Deletion |
|---|---|---|---|---|---|
L945 (DT108) | 4,792,951-4,793,967 | 1,016 | STM4534 | Transcriptional regulator | Truncation (37) |
L927 (DT12a) | 2,905,570-2,907,184 | 1,614 | STM2763, STM2764 | Putative intergrase | Deletion |
L927 (DT12a), L847 (DT197), DT104 | 2,748,190-2,749,475 | 1,285 | STM2599 (gipA) | Gifsy-1 minor phage tail | Deletion |
L852 (DT135a), SL1344 | 334,297-334,903 | 606 | STM291 | Putative RHS like protein | Truncation (15) |
L847 (DT197) | 975,166-977,158 | 1,992 | STM905, STM906 | Fels-1 hypothetical protein | Deletion |
L847 (DT197) | 341,423-342,445 | 1,022 | STM299 (safA) | Putative outer membrane protein | Truncation (46) |
L847 (DT197) | 2,142,063-2,142,621 | 558 | STM2066 (sopA) | Secreted effector protein | Truncation (24) |