Table 1 Statistics of categorization and abundance of DGE tags
Summary | Â | B. rapa | B. oleracea | B. napus- F1 | B. napus- F2 | B. napus- F3 | B. napus- F4 | B. napus- N |
|---|---|---|---|---|---|---|---|---|
Raw Data | Total | 6178564 | 6059222 | 6155227 | 6092805 | 6142098 | 5938583 | 5964594 |
Raw Data | Distinct Tag | 293575 | 243895 | 331406 | 275597 | 284202 | 272986 | 269285 |
Clean tag | Total number | 6018254 | 5930726 | 6022170 | 5950123 | 5991210 | 5798939 | 5823113 |
Clean tag | Distinct Tag number | 133499 | 116771 | 199428 | 134403 | 134721 | 134857 | 128967 |
Tag Mapping to Gene | Total number | 1964909 | 1747843 | 3025405 | 2354059 | 1652733 | 2295897 | 2253347 |
Tag Mapping to Gene | Distinct Tag number | 44267 | 36220 | 88270 | 49781 | 42613 | 51122 | 45358 |
Unambiguous Tag Mapping to Gene | Total number | 1679848 | 1475050 | 2495411 | 2016182 | 1415736 | 1971591 | 1924944 |
Unambiguous Tag Mapping to Gene | Total % of clean tag | 27.91% | 24.87% | 41.44% | 33.88% | 23.63% | 34.00% | 33.06% |
Unambiguous Tag Mapping to Gene | Distinct Tag number | 39414 | 31933 | 79648 | 44456 | 37996 | 45762 | 40561 |
Unambiguous Tag Mapping to Gene | Distinct Tag % of clean tag | 29.52% | 27.35% | 39.94% | 33.08% | 28.20% | 33.93% | 31.45% |
Tag-mapped Genes | number | 19023 | 18547 | 24383 | 20659 | 18881 | 20692 | 19955 |
Tag-mapped Genes | % of ref genes | 46.20% | 45.05% | 59.22% | 50.17% | 45.86% | 50.26% | 48.47% |
Unambiguous Tag-mapped Genes | number | 16574 | 15970 | 22059 | 18155 | 16479 | 18196 | 17448 |
Unambiguous Tag-mapped Genes | % of ref genes | 40.25% | 38.79% | 53.58% | 44.09% | 40.02% | 44.19% | 42.38% |
Mapping to Genome | Total number | 2437918 | 2105332 | 1776978 | 2290544 | 2658991 | 2232572 | 2164464 |
Mapping to Genome | Total % of clean tag | 40.51% | 35.50% | 29.51% | 38.50% | 44.38% | 38.50% | 37.17% |
Mapping to Genome | Distinct Tag number | 44076 | 30703 | 49898 | 42334 | 45680 | 42590 | 40689 |
Mapping to Genome | Distinct Tag % of clean tag | 33.02% | 26.29% | 25.02% | 31.50% | 33.91% | 31.58% | 31.55% |
Unknown Tag | Total number | 1615427 | 2077551 | 1219787 | 1305520 | 1679486 | 1270470 | 1405302 |
Unknown Tag | Total % of clean tag | 26.84% | 35.03% | 20.25% | 21.94% | 28.03% | 21.91% | 24.13% |
Unknown Tag | Distinct Tag number | 45156 | 49848 | 61260 | 42288 | 46428 | 41145 | 42920 |
Unknown Tag | Distinct Tag % of clean tag | 33.82% | 42.69% | 30.72% | 31.46% | 34.46% | 30.51% | 33.28% |