Table 2 Number and type of loci, genetic distance and marker density for the refined NP map
From: Construction of a reference genetic linkage map for carnation (Dianthus caryophyllus L.)
New LG | Previous LG (Yagi et al. [14]) | Total loci | Published RAPD loci (in Yagi et al. [14]) | New RAPD and STS loci | Published SSR loci (in Yagi et al. [14]) | New SSR loci | Length of LGs (cM) | Marker density (loci/cM) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SSR locus names | Subtotal | |||||||||||||
GS- | MS-, DCD- | CB-, CF- | DCEST- | CES- | NES- | |||||||||
SSR resource | Â | |||||||||||||
| Â | Â | Â | Â | Â | Genomic, EST | Genomic | Genomic, EST | Genomic | EST | EST | EST | Â | Â | Â |
NP_1 | A7, A10 | 30 | 10 | 1 | 0 | 11 | 1 | 0 | 0 | 7 | 0 | 19 | 90.6 | 0.33 |
NP_2 | Â | 11 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 7 | 0 | 11 | 46.3 | 0.24 |
NP_3 | Lower region of A1 | 26 | 12 | 0 | 1 | 4 | 0 | 0 | 1 | 8 | 0 | 13 | 67.3 | 0.39 |
NP_4 | A6 | 41 | 21 | 0 | 1 | 10 | 0 | 0 | 0 | 9 | 0 | 19 | 59.5 | 0.69 |
NP_5 | A4 | 17 | 8 | 0 | 0 | 5 | 0 | 2 | 0 | 2 | 0 | 9 | 66.1 | 0.26 |
NP_6 | Upper region of A1 | 15 | 5 | 0 | 2 | 1 | 0 | 2 | 1 | 4 | 0 | 8 | 44.3 | 0.34 |
NP_7 | A5 | 24 | 11 | 1 | 1 | 4 | 0 | 1 | 1 | 5 | 0 | 11 | 78.5 | 0.31 |
NP_8 | A12 | 15 | 3 | 3 | 0 | 3 | 0 | 2 | 0 | 4 | 0 | 9 | 106.6 | 0.14 |
NP_9 | A8 | 24 | 17 | 1 | 0 | 3 | 0 | 2 | 0 | 1 | 0 | 6 | 51.0 | 0.47 |
NP_10 | A9 | 20 | 4 | 2 | 0 | 9 | 0 | 1 | 0 | 4 | 0 | 14 | 58.2 | 0.34 |
NP_11 | A13, A15 | 16 | 5 | 1 | 0 | 3 | 0 | 2 | 0 | 5 | 0 | 10 | 64.7 | 0.25 |
NP_12 | A11, A14 | 20 | 8 | 0 | 2 | 4 | 0 | 0 | 0 | 6 | 0 | 10 | 42.9 | 0.47 |
NP_13 | A2 | 32 | 15 | 0 | 0 | 6 | 1 | 0 | 0 | 5 | 5 | 17 | 93.1 | 0.34 |
NP_14 | A3 | 33 | 13 | 1 | 2 | 8 | 1 | 1 | 1 | 1 | 5 | 17 | 80.7 | 0.41 |
NP_15 | A16 | 24 | 5 | 0 | 0 | 5 | 0 | 1 | 0 | 10 | 3 | 19 | 28.5 | 0.84 |
Total | Â | 348 | 137 | 10 | 9 | 80 | 3 | 14 | 4 | 78 | 13 | 192 | 978.3 | 0.36 |