Table 1 Top10-transcripts of the Tco > Sco-group with known functional MapMan annotation
Identifier | MapMan sub-bin | Putative function according Mercator (score of the blast hit in italics) | RPKM TCO | RPKM SCO | Log2 fold TCO/ SCO |
|---|---|---|---|---|---|
WZ0AQRAP12YP16FM1 | development. unspecified | weakly similar (129) to AT2G42840 PDF1 (PROTODERMAL FACTOR 1) | 11.5 | 0.0 | 9.4 |
WZ0AQRAP12YM18FM1 | protein. post-translational modification | weakly similar to (182) AT4G38520 protein phosphatase 2C family protein / PP2C family protein | 31.3 | 0.1 | 8,5 |
Gnl|UG|Qro#S57156573 | misc. GDSL-motif lipase | weakly similar (180) to AT4G18970 GDSL-motif lipase/ hydrolase family protein | 3.7 | 0.0 | 6.8 |
Gnl|UG|Qro#S57132810 | misc. protease inhibitor/ seed storage/ lipid transfer protein (LTP) family protein | weakly similar (170) to AT2G45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein weakly similar (145) to 14KD_DAUCA 14Â kDa proline-rich protein DC2.15 precursor - Daucus carota | 6.4 | 0.1 | 6.7 |
WZ0AQRAQ11YF07FM1 | DNA. synthesis/ chromatin structure. histone | weakly similar (159) to AT5G59910 HTB4; DNA binding | weakly similar (160) to H2B_GOSHI Histone H2B - Gossypium hirsutum | 27.4 | 0.3 | 6.6 |
Gnl|UG|Qro#S57098114 | protein. degradation. serine protease | moderately similar (392) to AT4G17040 ATP-dependent Clp protease proteolytic subunit, putative weakly similar (106) to CLPP_CHLVU ATP-dependent Clp protease proteolytic subunit (EC3.4.21.92) | 5.0 | 0.1 | 6.6 |
Gnl|UG|Qro#S57144797 | RNA. regulation of transcription. MYB-related transcription factor family | weakly similar (191) to AT1G74840 myb family transcription factor | 13.9 | 0.2 | 6.4 |
Gnl|UG|Qro#S57095514 | cell wall. degradation. cellulases and beta -1, 4-glucanases | moderately similar (314) to AT1G70710 CEL1, ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); cellulase/ hydrolase, hydrolysing O-glycosyl compounds | 15.9 | 0.2 | 6.3 |
WZ0AQRAP12YB01FM1 | RNA. processing. ribonucleases | weakly similar (182) to MAL11_MALDO Major allergen Mal d 1 (Mal d I) - Malus domestica | 40.8 | 0.8 | 5.7 |
WZ0AQRAP10YM20FM1 | stress. abiotic. unspecified | moderately similar to (237) AT3G05950; germin-like protein, putative | 0.9 | 0.0 | 5.6 |