Table 2 Top10-transcripts of the Tco < Sco-group with known functional MapMan annotation
Identifier | MapMan subbin | Putative function according Mercator (score of the blast hit in italics) | RPKM TCO | RPKM SCO | Log2 fold TCO/ SCO |
|---|---|---|---|---|---|
WZ0AQRAQ11YC24FM1 | protein. degradation. ubiquitin | moderately similar (257) to AT3G52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1), EMB2167, ERD16, HAP4 UBQ1; protein binding / structural constituent of ribosome weakly similar (150) to UBIQ_WHEAT Ubiquitin | 0.2 | 396.7 | -10.8 |
Gnl|UG|Qro#S57141407 | stress. biotic | moderately similar (226) to AT4G11650 ATOSM34 (osmotin 34) moderately similar (285) to P21_SOYBN Protein P21 - Glycine max | 7.4 | 1514.8 | -7.7 |
Gnl|UG|Qro#S57077753 | cell. organisation | moderately similar (380) to AT5G12380 annexin, putative moderately similar (471) to ANX4_FRAAN Annexin-like protein RJ4 - Fragaria ananassa | 1.3 | 103.7 | -6.3 |
Gnl|UG|Qro#S57131911 | protein. synthesis. ribosomal protein. eukaryotic. 40S subunit.S8 | moderately similar (297) to AT5G59240 40S ribosomal protein S8 (RPS8B) moderately similar (313) to RS8_MAIZE 40S ribosomal protein S8 - Zea mays | 0.2 | 12.2 | -5.7 |
Gnl|UG|Qro#S57149481 | stress. abiotic. unspecified | moderately similar (231) to AT5G53160 unknown protein | 0.1 | 2.5 | -5.6 |
Gnl|UG|Qro#S57088372 | stress. biotic. PR-proteins | weakly similar (134) to AT5G17680 disease resistance protein (TIR-NBS-LRR class), putative | 0.7 | 13.7 | -4.3 |
Gnl|UG|Qro#S57110966 | misc. peroxidases | weakly similar (191) to AT5G51890 peroxidase weakly similar to (188) PER2_ARAHY Cationic peroxidase 2 precursor (EC 1.11.1.7; PNPC2) - Arachis hypogaea | 0.1 | 1.0 | -4.2 |
Gnl|UG|Qro#S57139400 | transport. sugars | moderately similar (241) to AT4G36670 mannitol transporter, putative weakly similar (109) to HEX6_RICCO Hexose carrier protein HEX6 - Ricinus communis | 0.1 | 2.4 | -4.2 |
Gnl|UG|Qro#S57094988 | secondary metabolism. isoprenoids. carotenoids. carotenoid cleavage dioxygenase | very weakly similar (87.8) to AT3G63520 CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1), ATCCD1, ATNCED1, NCED1; 9-cis-epoxycarotenoid dioxygenase | 0.3 | 5.8 | -4.1 |
gnl|UG|Qro#S57087752 | protein. post-translational modification | moderately similar to (294) AT3G51630 WNK5 (WITH NO LYSINE (K) KINASE 5), ZIK1, ATWNK5; protein kinase | 1.7 | 28.1 | -4.1 |