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Table 1 Predicted SNP effects on open-reading frames (ORFs) and untranslated regions (UTRs) of annotated SNP-genes 1

From: Probing functional polymorphisms in the dengue vector, Aedes aegypti

 

LVP

CTM

RexD

Polymorphism class

SNPs2

Genes

SNPs2

Genes

SNPs2

Genes

Non-synonymous

6577 (1108)

2296

11,815 (3553)

3072

12327 (3757)

3124

Splice site acceptor

180 (91)

168

160 (56)

146

137 (39)

126

Splice site donor

168 (89)

152

128 (46)

115

119 (32)

105

Start gained3

110 (13)

101

214 (70)

194

197 (52)

180

Start lost

10 (3)

10

20 (6)

19

17 (3)

17

Stop gained

34 (12)

33

52 (20)

49

58 (51)

42

Stop lost

26 (3)

23

38 (9)

35

31 (7)

29

Synonymous

29802 (3902)

3312

55691 (15287)

4111

57484 (15887)

4128

Synonymous stop

23 (2)

23

36 (11)

36

42 (14)

42

3'UTR

11,354 (2100)

2625

18,349 (5111)

3003

19,065 (5283)

3054

5'UTR

2844 (486)

1223

5133 (1506)

1709

5169 (1461)

1741

  1. 1Total number of SNPs predicted to induce non-synonymous and synonymous changes, splice site acceptors and donors, gain or loss of an initiation or termination codon within the open reading frame and changes in 3’- and 5’-UTRs are reported for each strain along with the number of genes in which they occur.
  2. 2The number of SNPs unique for each strain is in parenthesis.
  3. 3Only ATG start codons are included.
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BMC Genomics

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