Table 2 GO terms significantly over-represented, among genes differentially expressed, between Perkinsus infected and non infected clams

Response to bacterium

5

3

4,1E-04

1,00E-01

Biological process

Translation

9

5,4

1,7E-03

2,00E-01

Oxidation reduction*

11

6,6

3,3E-02

3,80E-01

Hexose metabolic process

4

2,4

3,7E-02

6,70E-01

Monosaccharide metabolic process

4

2,4

3,7E-02

6,30E-01

Cytoskeleton organization

4

2,4

7,1E-02

6,80E-01

Cellular compartment

Nucleosome

3

1,8

2,2E-02

6,60E-01

Protein-DNA complex

3

1,8

2,4E-02

4,60E-01

Non-membrane-bounded organelle

10

6

4,1E-02

5,00E-01

Intracellular non-membrane-bounded organelle

10

6

4,1E-02

5,00E-01

Chromatin

3

1,8

7,8E-02

6,40E-01

Molecular function

Triose-phosphate somerase activity

2

1,2

1,8E-02

9,30E-01

Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

3

1,8

4,3E-02

9,60E-01

Translation factor activity, nucleic acid binding

4

2,4

4,3E-02

8,70E-01

Intromolecular oxidoreductase activity, interconverting aldoses and ketoses

2

1,2

8,8E-02

9,60E-01

RNA binding

6

3,6

9,5E-02

9,40E-01

Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear, amidenes

2

1,2

9,6E-02

9,10E-01

KEGG pathway

Glycolysis Gluconeogenesis

6

3,6

3,6E-04

2,10E-02

Base excision repair

3

1,8

4,8E-02

7,60E-01

Fructose and mannose metabolism

3

1,8

6,4E-02

7,30E-01

Focal adhesion

6

3,6

7,4E-02

6,80E-01

Nucleotide excision repair

3

1,8

7,6E-02

6,00E-01

NOD-like receptor signaling pathway

3

1,8

9,7E-02

6,30E-01

Sub category

Term

*Oxidation reduction

Aldo-keto reductase family member A1a (aldehyde reductase)

Dehydrogenase/reductase (SDR family) member 11a

Hypothetical LOC570613; sorbitol dehyfdrogenase

Methionine sulfoxide reductase 33

Similar to alcohol dehydrogenase S; alcohol dehydrogenase S

Sulfide quinone reductase-like (yeast)

Lbiquinol-cytochrome reductase hinge protein

Hydroxysteroid (17-beta) dehydrogenase 14

zgs: 56622; similar to CG6084CG6084-PA

Short chain dehydrogenase/reductase family 16C member Sa

Aldehyde dehydrogenase family, member A1