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Table 1 Taxonomic collections of curated genome-wide TRNs in diverse microbes

From: RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Taxonomic group Phylum Reference genomes TF regulogs RNA regulogs TF binding sites RNA sites Regulated genes1 Genes per genome2
Bacillales Firmicutes 11 134 39 3815 668 7301 664
Staphylococcus Firmicutes 7 48 29 1965 288 3329 476
Lactobacillaceae Firmicutes 15 79 39 1811 581 3784 252
Streptococcaceae Firmicutes 15 69 29 3118 400 5652 377
Clostridiaceae Firmicutes 20 7 40 303 968 2489 124
Enterobacteriales Proteobacteria 12 87 18 7365 188 9028 752
Shewanella Proteobacteria 16 80 15 8450 291 10817 676
Ralstonia Proteobacteria 6 24 10 574 66 1297 216
Desulfovibrionales Proteobacteria 10 92 9 1942 72 3368 337
Thermotogales Thermotogae 11 33 13 642 88 2153 196
Corynebacteriaceae Actinobacteria 8 45 13 937 80 1624 203
Bacteroidaceae Bacteroidae 11 35 2 667 84 1797 163
Chloroflexi Chloroflexi 5 30 17 314 98 1014 203
Cyanobacteria Cyanobacteria 14 18 11 1032 86 1442 103
Total: - 161 781 284 32935 3958 55095 342
  1. 1Total number of regulated genes in all TF- and RNA operated regulons.
  2. 2Average numbers of regulated genes per genome were calculated for each studied taxonomic group; the average numbers for all lineages are given in the last line.