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Table 2 BLASTN results of 25,417 25-mer oligo sequences

From: Mining of haplotype-based expressed sequence tag single nucleotide polymorphismsin citrus

 

25-mers

Hits

Alns

25/25

24/25

24/24

23/23

22/22

21/21

No hits found

2,947

        

1 hit (1 aln)

19,943

19,943

19,943

10,926

8,555

127

116

112

107

1 hit (2+ aln)

1,571

1,571

4,614

2,152

2,026

161

73

78

124

2+ hits (1+ aln each hit)

956

2,779

19,111

7,923

9,014

389

353

715

717

Total

25,417

24,293

43,668

21,001

19,595

677

542

905

948

  1. The Clementine reference genome was used as the BLAST database. Allthe oligo sequences were listed in Additional file 2. Aln – Alignment(s); 1 hit (1 aln) – hitonly 1 scaffold with 1 alignment; 1 hit (2+ aln) – hit on only1 scaffold but with 2 or more alignments, and 2+ hits(1 + aln) – hit on 2 and more scaffolds with oneor more alignment to each scaffold.