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Table 2 Differential expression of genes related to the immune response

From: Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Gene ID1 Annotation2 Mean fold change± SE3 Identity4
Ssa#S24188435 AY929386 216.3 ± 58.8 TNFα 2
Omy#gi185133433 NM_001124347 197.9 ± 79.1 IL-1B
Ssa#STIR00083_4 AY929385 99.2 ± 17.9 TNFα 1
Omy#gi13235345 AJ279069 93.3 ± 15.4 IL-8
Ssa#S34822137 AM397592 29.7 ± 5.1 Complement c3
Ssa#STIR04816 BT047247 25.5 ± 13.1 Hepcidin
Omy#S37211068 EF175381 20.7 ± 1.1 Prostaglandin G/H synthase 2b
Ssa#STIR08688 TC65065 17.9 ± 4.9 Ferritin
Ssa#S21512941 AY572832 16.1 ± 0.2 C type lectin receptor A
Ssa#STIR35259 NM_001124618 13.8 ± 0.9 Complement protein component c7-1
Ssa#STIR23928 NM_001124410.1 13.3 ± 10.8 Complement factor H precursor
Ssa#S43134841_S NM_001123611 9.5 ± 2.5 CD4-like protein
Ssa#STIR00084_4 DW569632 8.5 ± 0.3 NF-kappa-b inhibitor alpha
Ssa#S18892257 AJ505008 3.9 ± 0.3 IL-1 receptor accessory protein
Ssa#STIR14647 TC73172 3.9 ± 0.0 MAP kinase-interacting serine/threonine kinase 2
Ssa#S30276405 DW563373 3.9 ± 0.2 Suppressor of cytokine signaling 1
Ssa#S35660755 EG895473 3.4 ± 0.3 NF-kappa-B p100 subunit
Ssa#S35667643 EG902361 3.4 ± 0.2 Complement c1q-like protein 4
Ssa#S31992293 DY720890 3.2 ± 0.2 IL-10 receptor beta chain precursor
Omy#gi197927463 NM_001124396 3.0 ± 0.2 IL-1 receptor antagonist
Ssa#KSS392 NM_001141766 2.9 ± 0.3 IL-1 receptor-associated kinase 4
Ssa#CB516003 CB516003 2.8 ± 0.3 NF-kappa-B 1 p105 subunit
Ssa#KSS3660 BT059477 2.8 ± 0.3 NF-kappa-B inhibitor epsilon
Ssa#STIR08793 TC65192 2.8 ± 0.1 Suppressor of cytokine signaling 3
Ssa#STIR00087_4 DW555246 2.7 ± 0.2 IL-10
Ssa#STIR12117 TC69580 2.3 ± 0.1 Transcription factor jun-B
Omy#S18157537 BX883008 2.1 ± 0.1 Interleukin-6 receptor subunit alpha precursor
Ssa#DW006091 DW006091 2.1 ± 0.2 MHC class i antigen
Ssa#TC106540 TC106540 −2.4 ± 0.1 TNF receptor-associated factor 6
Ssa#STIR08822 TC65229 −2.6 ± 0.1 IL-15
Ssa#S18849636_S BT071912.1 −2.6 ± 0.2 Complement C4-1
Ssa#S35693513 EG928231 −3.3 ± 0.8 Complement component 6 precursor
Ssa#S35687715 EG922433 −22.7 ± 8.3 Complement factor D precursor
  1. List of selected mRNAs associated with the immune response found to be increased or decreased in expression in response to rIL-1β stimulation. Genes were assigned to the table based upon both their GO identifier and previous knowledge of their functions. Genes with greatest fold differences in expression are presented, the genes that are lower in expression are denoted by (-) value. The genes shown were significant at p < 0.05 following t- tests with Benjamini-Hochberg FDR and greater than 2-fold change. 1Indicates the unique code for the feature on the microarray, 2Accession number of the cDNA sequence, accession numbers beginning with TC are for oligos from the TIGR Atlantic Salmon Gene Index. 3Fold change, in the case of oligos that featured multiple times in the gene list the one with the highest fold change is reported. 4Identity of the probe target as determined by BLASTX and BLASTN searches.