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Table 4 Differential expression of genes for growth regulation & structural proteins

From: Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Gene ID1 Annotation2 Mean fold change± SE3 Identity4
Ssa#S30261281 DW548249 17.2 ± 2.5 IGF binding protein 6
Ssa#S22669043 AY462105 4.6 ± 0.2 Growth hormone receptor isoform 1 precursor
Ssa#S35518234 EG804612 2.9 ± 0.2 CCAAT/enhancer binding protein delta
Ssa#DW566454 DW566454 2.6 ± 0.4 Signal transducer and activator of transcription 2
Ssa#STIR16259 TC75448 2.3 ± 0.1 YY1 transcription factor
Ssa#STIR03019 BT049051 −2.1 ± 0.0 Regulator of g-protein signaling 18
SsaHomCont3_080 SsaHomContl3 −2.2 ± 0.3 Beta-actin
Ssa#S30278631 DW565599 −2.2 ± 0.1 Collagen alpha 2 type VI
Omy#TC165689 TC165689 −2.4 ± 0.2 Collagen alpha 2 type V preproprotein
Ssa#S18891260 CB515159 −2.4 ± 0.4 Type I collagen alpha 2 chain
Ssa#S26643985 DQ163908 −2.5 ± 0.2 Growth hormone receptor isoform 2 precursor
Ssa#S35580189 EG866567 −2.5 ± 0.0 Collagen alpha 1 type II isoform 1 precursor
Ssa#STIR17006 TC76573 −2.6 ± 0.2 Growth arrest-specific 1
Ssa#CA041082 CA041082 −2.8 ± 0.2 Transforming growth factor, beta receptor III
Ssa#S35580645 EG867023 −2.8 ± 0.2 Vascular endothelial growth factor D
Ssa#CA037592 CA037592 −2.8 ± 0.2 Myosin IB
Ssa#S31998683 DY727280 −2.8 ± 0.2 Laminin, beta 1
Ssa#S35563089 EG849467 −2.9 ± 0.3 Collagen alpha 1 type V
Ssa#S31977813 DY706603 −3.1 ± 0.1 Myosin phosphatase-Rho interacting protein isoform 1
Ssa#STIR25506 TC89337 −3.1 ± 0.1 Type i keratin s8
Ssa#S46924879 EU861009.1 −3.4 ± 0.1 IGF binding protein 5
Ssa#S32004569 DY733166 −3.5 ± 0.5 Corticotropin releasing factor precursor
Ssa#STIR05529 BT046528 −3.5 ± 0.2 Collagen triple helix repeat containing 1
Ssa#TC91867 TC91867 −4.2 ± 0.3 Collagen alpha 1 type XI isoform A preproprotein
Ssa#S35504964 EG791342 −4.6 ± 0.5 Troponin I, slow skeletal muscle
Ssa#STIR00115_3 BT045917 −4.8 ± 0.6 Tropomyosin-1 alpha chain
Ssa#STIR11900 TC69277 −5.2 ± 0.4 Myosin ic
Ssa#S37580916 EF432866 −5.4 ± 0.7 IGF binding 7 precursor
Ssa#S37580919 EF432861 −7.9 ± 0.4 IGF binding protein 4
Ssa#S35582593 EG868971 −10.9 ± 5.3 Collagen alpha 1 type X precursor
Ssa#STIR30922 TC97553 −27.9 ± 2.7 Myf5 protein
  1. List of selected mRNAs related to growth regulation & structural proteins found to be increased or decreased in expression in response to rIL-1β stimulation. Genes were assigned to the table based upon both their GO identifier and previous knowledge of their functions. Genes with greatest fold differences in expression are presented, the genes that are lower in expression are denoted by (-) value. The genes shown were significant at p < 0.05 following t- tests with Benjamini-Hochberg FDR and greater than 2-fold change. 1Indicates the unique code for the feature on the microarray, 2 Accession number of the cDNA sequence, accession numbers beginning with TC are for oligos from the TIGR Atlantic Salmon Gene Index. 3Fold change, in the case of oligos that featured multiple times in the gene list the one with the highest fold change is reported. 4Identity of the probe target as determined by BLASTX and BLASTN searches.