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Table 5 Differential expression of genes related to the cell cycle & DNA replication

From: Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Gene ID1 Annotation2 Mean fold change± SE3 Identity4
Ssa#S30294618 DW581582 2.4 ± 0.3 Cyclin D1
Ssa#S31971283 DY700073 2.4 ± 0.2 Cell division cycle associated 4 isoform 14
Ssa#S35549130 EG835508 2.2 ± 0.1 Cyclin G2
Ssa#S30291070 DW578034 −2.0 ± 0.1 Cyclin-dependent kinase 2 isoform 1
Ssa#STIR18340 TC78544 −2.1 ± 0.1 Cyclin B1
Omy#S19711047 CR367942 −2.1 ± 0.2 Cyclin B2
Ssa#S35661746 EG896464 −2.2 ± 0.2 Cell cycle progression 1 isoform 2
Ssa#S35547210 EG833588 −2.2 ± 0.1 Mediator of RNA polymerase II transcription subunit 22
Ssa#TC109012 TC109012 −2.6 ± 0.2 Cyclin E1 isoform 1
Ssa#KSS3754 NM_001173741 −2.8 ± 0.2 Minichromosome maintenance complex component 4
Ssa#STIR12008 TC69433 −3.0 ± 0.1 Cell division control protein 2
Ssa#TC103697_S TC103697 −3.0 ± 0.1 DNA replication licensing factor mcm2
Ssa#S30290620 DW577584 −3.2 ± 0.1 Cyclin-dependent kinase 4
Ssa#S35659383 EG894101 −3.3 ± 0.1 Cyclin A2
Ssa#S18888540 CB514505 −4.2 ± 0.3 Minichromosome maintenance complex component 2
Ssa#S35699881 EG934599 −4.4 ± 0.1 Minichromosome maintenance complex component 3
Ssa#S35664683 EG899401 −4.8 ± 0.4 DNA replication complex GINS protein PSF1
Ssa#S30295467 DW582431 −5.1 ± 0.6 Spindle pole body component 24 homolog
Ssa#STIR15543 TC74419 −5.3 ± 0.5 Minichromosome maintenance complex component 7
Ssa#S18890448 CB516667 −6.7 ± 0.6 Minichromosome maintenance complex component 5
Ssa#S30277130 DW564098 −10.6 ± 0.4 Cell division cycle associated 7 isoform 1
Omy#S19711255 CR367985 −14.7 ± 8.7 Cyclin E2
Omy#S34311297 CU069027 −15.1 ± 2.8 Cell division cycle 6 protein
  1. List of selected mRNAs related to the cell cycle & DNA replication found to be increased or decreased in expression in response to rIL-1β stimulation. Genes were assigned to the table based upon both their GO identifier and previous knowledge of their functions. Genes with greatest fold differences in expression are presented, the genes that are lower in expression are denoted by (-) value. The genes shown were significant at p < 0.05 following t- tests with Benjamini-Hochberg FDR and greater than 2-fold change. 1Indicates the unique code for the feature on the microarray, 2Accession number of the cDNA sequence, accession numbers beginning with TC are for oligos from the TIGR Atlantic Salmon Gene Index. 3Fold change, in the case of oligos that featured multiple times in the gene list the one with the highest fold change is reported. 4Identity of the probe target as determined by BLASTX and BLASTN searches.