Skip to main content

Table 2 Assembly results of 454 data by using Newbler default and optimized parameters

From: De novo transcriptome analysis using 454 pyrosequencing of the Himalayan Mayapple, Podophyllum hexandrum

Description Newbler (Default parameter) Newbler (Optimized parameter)
  Contigs Singlets Contigs Singlets
Number of contigs/Singlets 3372 62937 12940 27440
Total bases of contigs/Singlets(bp) 1143488 12156572 5928039 7033852
Mean contig/Singlet length 339.112 193.154 458.117 256.335
Contig/Singlet N50 339 190 463 240
Max Contig/Singlet size 2167 297 4915 399