Table 2 Count and percentage of changes given by small variants by type of change for each genotype
Type of change (alphabetical order) |  | 'Georgia Belle’ |  | 'Dr. Davis’ |  | 'F8,1-42’ |
|---|---|---|---|---|---|---|
Count | Percent | Count | Percent | Count | Percent | |
Codon Change + Codon Deletion | 98 | 0.01% | 64 | 0.01% | 95 | 0.01% |
Codon Change + Codon Insertion | 125 | 0.012% | 79 | 0.013% | 131 | 0.013% |
Codon Deletion | 143 | 0.014% | 82 | 0.013% | 135 | 0.014% |
Codon Insertion | 56 | 0.005% | 35 | 0.006% | 63 | 0.006% |
Frame Shift | 1,134 | 0.11% | 847 | 0.134% | 1,284 | 0.132% |
Non-Synonymous-Coding | 25,607 | 2.489% | 15,537 | 2.464% | 28,699 | 2.953% |
Non-Synonymous-Start | 6 | 0.001% | 2 | 0.0005% | 4 | 0.0001% |
Start Gained | 258 | 0.025% | 169 | 0.027% | 211 | 0.032% |
Start Lost | 49 | 0.005% | 35 | 0.006% | 42 | 0.004% |
Stop Gained | 635 | 0.062% | 499 | 0.079% | 947 | 0.097% |
Stop Lost | 75 | 0.007% | 45 | 0.007% | 70 | 0.007% |
Synonymous Coding | 17,743 | 1.725% | 10,217 | 1.62% | 20,046 | 2.062% |
Synonymous Stop | 25 | 0.002% | 16 | 0.003% | 38 | 0.004% |