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Table 5 Exclusive Structural Variants per genotype, their length, their type and the genomic region in which they occurred

From: Heterogeneity in the entire genome for three genotypes of peach [Prunus persica(L.) Batsch] as distinguished from sequence analysis of genomic variants

'Dr. Davis’
ID Scaffold Coordinates SV Type Length Sequence Gene or Repeat
1495 1 13799591..13800210 UnBal-Inv-Dup 619 Gene ppb020139m.g
16911 2 10443723..10444191 UnBal-Inv-Dup 468 - -
17043 2 10707357..10707900 UnBal-Inv-Dup 543 Repeat Repeat_45491
19815 2 17082238..17082630 Bal-Inv-Trans 392 Repeat Repeat_50409, Repeat_50410, Repeat_50411
19815 3 5906870..5907047 Bal-Inv-Trans 177 Repeat Repeat_61206
20201 2 1815521..1816145 UnBal-Inv-Dup 624 Repeat Repeat_39494
23151 2 2648789..2649409 UnBal-Inv-Dup 620 Repeat Repeat_40108
23712 2 383807..384764 Bal-Inv-Framt 957 Repeat Repeat_38367, Repeat_38368
24146 2 4837884..4838548 UnBal-Inv-Dup 664 Repeat Repeat_41631
26318 3 1013398..1014058 UnBal-Inv-Dup 660 Repeat Repeat_57671
29142 3 18696965..18697347 UnBal-Inv-Dup 382 Repeat Repeat_70838, Repeat_70839
29263 3 19066495..19066675 UnBal-Large-Dup 180 Repeat Repeat_71125
29263 3 19068151..19068360 UnBal-Large-Dup 209 Repeat Repeat_71125
32395 3 8050690..8051662 Bal-Inv-Framt 972 Repeat Repeat_62915
43139 5 128216..128814 UnBal-Inv-Dup 598 Repeat Repeat_94279
46422 5 6900639..6900801 UnBal-Trans 162 Repeat Repeat_99387, Repeat_99388
46422 8 11283205..11283711 UnBal-Trans 506 Repeat Repeat_151873, Repeat_151874
52028 6 2620470..2620776 UnBal-Trans 306 Repeat Repeat_108508, Repeat_108509
52028 8 11283214..11283719 UnBal-Trans 505 Repeat Repeat_151873, Repeat_151874
58484 7 4749087..4750073 Bal-Inv-Framt 986 Repeat Repeat_130958
58485 7 4749430..4750258 Bal-Inv-Framt 828 Repeat Repeat_130958
63963 8 7122023..7122827 Bal-Inv-Framt 804 mRNA ppa026667m
64422 8 9086244..9087200 Bal-Inv-Framt 956 Repeat Repeat_150549
'F8,1-42’
ID Scaffold Coordinates SV Type Length Sequence Gen or Repeat
20993 2 10443560..10444206 Bal-Inv-Framt 646 - -
21986 2 12156442..12157007 UnBal-Inv-Dup 565 Repeat Repeat_46629, Repeat_46630
24536 2 16606936..16607425 UnBal-Inv-Dup 489 - -
29055 2 2650281..2650575 UnBal-Inv-Trans 294 Repeat Repeat_49991, Repeat_49992
29055 3 15046335..15046888 UnBal-Inv-Trans 553 Gene ppa020237m.g
30173 2 4307001..4307685 UnBal-Inv-Dup 684 Repeat Repeat_41315, Repeat_41316, Repeat_41317
33929 3 10480044..10480270 UnBal-Inv-Dup 226 Gene ppa011613m.g
37571 3 19066494..19066675 UnBal-Large-Dup 181 - -
37571 3 19068151..19068359 UnBal-Large-Dup 208 Repeat Repeat_71125
46467 4 19153499..19153637 UnBal-Inv-Dup 138 Repeat Repeat_86571
55460 5 10569336..10569979 UnBal-Inv-Dup 643 EST EST217 [GenBank ID: FE969391.1]
55461 5 10569391..10570047 UnBal-Inv-Dup 656 EST EST217 [GenBank ID: FE969391.1]
65545 6 19832212..19832895 UnBal-Inv-Dup 683 Repeat Repeat_121473, Repeat_121474, Repeat_121475
77074 7 4761867..4762779 Bal-Inv-Framt 912 Repeat Repeat_130964
77412 7 5482889..5483887 Bal-Inv-Framt 998 EST HPL-01-A08 [GenBank: DN552811.1]
84240 8 5353089..5353931 Bal-Inv-Framt 842 Repeat Repeat_147771
'Georgia Belle’
ID Scaffold Coordinates SV Type Length Sequence Gen or Repeat
2525 1 1390693..1391565 Bal-Inv-Framt 872 EST PP_LEc0006H18f [GenBank ID: DW341826.1]
32059 2 191135..192115 Bal-Inv-Framt 980 EST PP_LEc0012I17f [GenBank ID: DW342898.1]
33996 2 22282633..22282891 UnBal-Inv-Dup 258 Repeat Repeat_53962
34581 2 23312824..23313409 UnBal-Inv-Dup 585 Repeat Repeat_54614, Repeat_54615, Repeat_54616
37966 2 4837563..4838555 Bal-Inv-Framt 992 Repeat Repeat_41631
49338 3 4508991..4509132 UnBal-Inv-Trans 141 Repeat Repeat_60164
49338 7 1525434..1525564 UnBal-Inv-Trans 130 Repeat Repeat_128579
57742 4 19154182..19154816 UnBal-Inv-Dup 634 EST AJ873513 [GenBank ID: AJ873513.1]
69825 5 10568959..10570034 Bal-Inv-Framt 1075 EST EST217 [GenBank ID: FE969391.1]
69826 5 10569191..10570123 Bal-Inv-Framt 932 EST EST217 [GenBank ID: FE969391.1]
76451 5 6900036..6900768 UnBal-Inv-Dup 732 Repeat Repeat_99387, Repeat_99388
95603 7 22382739..22383456 UnBal-Inv-Dup 717 Repeat Repeat_143336
95633 7 22436698..22437437 Bal-Inv-Framt 739 Repeat Repeat_143367
96867 7 4749469..4750167 UnBal-Inv-Dup 698 Repeat Repeat_130958
  1. ID identification number for each structural variant, SV Type Structural variant type, which includes UnBal-Inv-Dup Unbalanced Inverted Duplication, Bal-Inv-Trans Balanced Inverted Translocation, Bal-Inv-Framt Inversion of a genomic fragment, defined by balanced signatures, UnBal-Large-Dup Unbalanced large Duplication, UnBal-Trans Unbalanced Translocation, Sequence type of functional sequence, Length number of nucleotides rearranged in the sequence.
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BMC Genomics

ISSN: 1471-2164

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