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Table 5 Exclusive Structural Variants per genotype, their length, their type and the genomic region in which they occurred

From: Heterogeneity in the entire genome for three genotypes of peach [Prunus persica(L.) Batsch] as distinguished from sequence analysis of genomic variants

'Dr. Davis’

ID

Scaffold

Coordinates

SV Type

Length

Sequence

Gene or Repeat

1495

1

13799591..13800210

UnBal-Inv-Dup

619

Gene

ppb020139m.g

16911

2

10443723..10444191

UnBal-Inv-Dup

468

-

-

17043

2

10707357..10707900

UnBal-Inv-Dup

543

Repeat

Repeat_45491

19815

2

17082238..17082630

Bal-Inv-Trans

392

Repeat

Repeat_50409, Repeat_50410, Repeat_50411

19815

3

5906870..5907047

Bal-Inv-Trans

177

Repeat

Repeat_61206

20201

2

1815521..1816145

UnBal-Inv-Dup

624

Repeat

Repeat_39494

23151

2

2648789..2649409

UnBal-Inv-Dup

620

Repeat

Repeat_40108

23712

2

383807..384764

Bal-Inv-Framt

957

Repeat

Repeat_38367, Repeat_38368

24146

2

4837884..4838548

UnBal-Inv-Dup

664

Repeat

Repeat_41631

26318

3

1013398..1014058

UnBal-Inv-Dup

660

Repeat

Repeat_57671

29142

3

18696965..18697347

UnBal-Inv-Dup

382

Repeat

Repeat_70838, Repeat_70839

29263

3

19066495..19066675

UnBal-Large-Dup

180

Repeat

Repeat_71125

29263

3

19068151..19068360

UnBal-Large-Dup

209

Repeat

Repeat_71125

32395

3

8050690..8051662

Bal-Inv-Framt

972

Repeat

Repeat_62915

43139

5

128216..128814

UnBal-Inv-Dup

598

Repeat

Repeat_94279

46422

5

6900639..6900801

UnBal-Trans

162

Repeat

Repeat_99387, Repeat_99388

46422

8

11283205..11283711

UnBal-Trans

506

Repeat

Repeat_151873, Repeat_151874

52028

6

2620470..2620776

UnBal-Trans

306

Repeat

Repeat_108508, Repeat_108509

52028

8

11283214..11283719

UnBal-Trans

505

Repeat

Repeat_151873, Repeat_151874

58484

7

4749087..4750073

Bal-Inv-Framt

986

Repeat

Repeat_130958

58485

7

4749430..4750258

Bal-Inv-Framt

828

Repeat

Repeat_130958

63963

8

7122023..7122827

Bal-Inv-Framt

804

mRNA

ppa026667m

64422

8

9086244..9087200

Bal-Inv-Framt

956

Repeat

Repeat_150549

'F8,1-42’

ID

Scaffold

Coordinates

SV Type

Length

Sequence

Gen or Repeat

20993

2

10443560..10444206

Bal-Inv-Framt

646

-

-

21986

2

12156442..12157007

UnBal-Inv-Dup

565

Repeat

Repeat_46629, Repeat_46630

24536

2

16606936..16607425

UnBal-Inv-Dup

489

-

-

29055

2

2650281..2650575

UnBal-Inv-Trans

294

Repeat

Repeat_49991, Repeat_49992

29055

3

15046335..15046888

UnBal-Inv-Trans

553

Gene

ppa020237m.g

30173

2

4307001..4307685

UnBal-Inv-Dup

684

Repeat

Repeat_41315, Repeat_41316, Repeat_41317

33929

3

10480044..10480270

UnBal-Inv-Dup

226

Gene

ppa011613m.g

37571

3

19066494..19066675

UnBal-Large-Dup

181

-

-

37571

3

19068151..19068359

UnBal-Large-Dup

208

Repeat

Repeat_71125

46467

4

19153499..19153637

UnBal-Inv-Dup

138

Repeat

Repeat_86571

55460

5

10569336..10569979

UnBal-Inv-Dup

643

EST

EST217 [GenBank ID: FE969391.1]

55461

5

10569391..10570047

UnBal-Inv-Dup

656

EST

EST217 [GenBank ID: FE969391.1]

65545

6

19832212..19832895

UnBal-Inv-Dup

683

Repeat

Repeat_121473, Repeat_121474, Repeat_121475

77074

7

4761867..4762779

Bal-Inv-Framt

912

Repeat

Repeat_130964

77412

7

5482889..5483887

Bal-Inv-Framt

998

EST

HPL-01-A08 [GenBank: DN552811.1]

84240

8

5353089..5353931

Bal-Inv-Framt

842

Repeat

Repeat_147771

'Georgia Belle’

ID

Scaffold

Coordinates

SV Type

Length

Sequence

Gen or Repeat

2525

1

1390693..1391565

Bal-Inv-Framt

872

EST

PP_LEc0006H18f [GenBank ID: DW341826.1]

32059

2

191135..192115

Bal-Inv-Framt

980

EST

PP_LEc0012I17f [GenBank ID: DW342898.1]

33996

2

22282633..22282891

UnBal-Inv-Dup

258

Repeat

Repeat_53962

34581

2

23312824..23313409

UnBal-Inv-Dup

585

Repeat

Repeat_54614, Repeat_54615, Repeat_54616

37966

2

4837563..4838555

Bal-Inv-Framt

992

Repeat

Repeat_41631

49338

3

4508991..4509132

UnBal-Inv-Trans

141

Repeat

Repeat_60164

49338

7

1525434..1525564

UnBal-Inv-Trans

130

Repeat

Repeat_128579

57742

4

19154182..19154816

UnBal-Inv-Dup

634

EST

AJ873513 [GenBank ID: AJ873513.1]

69825

5

10568959..10570034

Bal-Inv-Framt

1075

EST

EST217 [GenBank ID: FE969391.1]

69826

5

10569191..10570123

Bal-Inv-Framt

932

EST

EST217 [GenBank ID: FE969391.1]

76451

5

6900036..6900768

UnBal-Inv-Dup

732

Repeat

Repeat_99387, Repeat_99388

95603

7

22382739..22383456

UnBal-Inv-Dup

717

Repeat

Repeat_143336

95633

7

22436698..22437437

Bal-Inv-Framt

739

Repeat

Repeat_143367

96867

7

4749469..4750167

UnBal-Inv-Dup

698

Repeat

Repeat_130958

  1. ID identification number for each structural variant, SV Type Structural variant type, which includes UnBal-Inv-Dup Unbalanced Inverted Duplication, Bal-Inv-Trans Balanced Inverted Translocation, Bal-Inv-Framt Inversion of a genomic fragment, defined by balanced signatures, UnBal-Large-Dup Unbalanced large Duplication, UnBal-Trans Unbalanced Translocation, Sequence type of functional sequence, Length number of nucleotides rearranged in the sequence.