Table 1 Phytozome locus ID and transcript details of Malus CPKs
Sl.No | Phytozome locus ID | Location in chromosome | Gene name | ORF | No.of a.a | No.of Introns | No.of alternative splicing variants | 5′-3′Coordinates | Phylogenetic group |
|---|---|---|---|---|---|---|---|---|---|
1 | MDP0000153100 | 2 | MdCPK1a | 1694 | 566 | 6 | 5 | MDC017159.84: 8453 - 14350 | I |
2 | MDP0000142687 | 7 | MdCPK1b | 1763 | 618 | 8 | 5 | MDC021045.283: 1756 - 8958 | I |
3 | MDP0000128057 | 7 | MdCPK1c | 1943 | 660 | 8 | 5 | MDC013839.354: 42 - 7131 | I |
4 | MDP0000232344 | 12 | MdCPK2 | 2296 | 775 | 8 | 4 | MDC012227.366: 34198 - 38360 | I |
5 | MDP0000260834 | 9 | MdCPK4a | 1553 | 517 | 6 | 4 | MDC020449.143: 14625 - 18251 | I |
6 | MDP0000232885 | 10 | MdCPK4b | 1544 | 518 | 6 | 2 | MDC010220.255: 18291 - 21903 | I |
7 | MDP0000269423 | 2 | MdCPK8a | 1612 | 553 | 8 | 3 | MDC001073.515: 2333 - 8854 | IV |
8 | MDP0000119457 | 15 | MdCPK8b | 1417 | 476 | 6 | 3 | MDC001073.498: 3281 - 6157 | IV |
9 | MDP0000260857 | 12 | MdCPK8c | 1881 | 665 | 9 | 5 | MDC021346.204: 29191 - 34837 | IV |
10 | MDP0000169895 | 12 | MdCPK9 | 1451 | 491 | 2 | 4 | MDC003603.228: 1126 - 2789 | I |
11 | MDP0000218522 | 6 | MdCPK10a | 1692 | 570 | 7 | 5 | MDC020438.169: 10660 - 14149 | IV |
12 | MDP0000301254 | Unanchored | MdCPK10b | 1618 | 548 | 7 | 8 | MDC016267.124: 15630 - 19053 | IV |
13 | MDP0000308706 | Unanchored | MdCPK10c | 1613 | 548 | 7 | 8 | MDC020438.160: 35695 - 39116 | IV |
14 | MDP0000494270 | 9 | MdCPK11 | 1489 | 498 | 0 | 15 | MDC010082.361: 3158 - 4654 | I |
15 | MDP0000164868 | 4 | MdCPK13a | 1757 | 585 | 8 | 4 | MDC000306.525: 1570 - 6773 | IV |
16 | MDP0000649496 | 13 | MdCPK13b | 1023 | 345 | 4 | 2 | MDC000271.449: 354 - 2825 | IV |
17 | MDP0000802997 | 8 | MdCPK17a | 1591 | 533 | 7 | 2 | MDC040478.10: 1862 - 4930 | II |
18 | MDP0000138436 | Unanchored | MdCPK17b | 1605 | 534 | 7 | 3 | MDC010071.376: 1022 - 3758 | II |
19 | MDP0000180811 | 11 | MdCPK19 | 1496 | 504 | 9 | 1 | MDC008434.490: 2551 - 5781 | II |
20 | MDP0000318339 | 14 | MdCPK20a | 2994 | 1023 | 10 | 3 | MDC031256.8: 21258 – 31086 | I |
21 | MDP0000513005 | 12 | MdCPK20b | 1963 | 679 | 7 | 0 | MDC008272.442: 6235 - 19231 | I |
22 | MDP0000232001 | 5 | MdCPK21 | 1641 | 554 | 7 | 3 | MDC002417.261: 24324 - 28052 | II |
23 | MDP0000262701 | 17 | MdCPK24a | 1623 | 541 | 7 | 3 | MDC020007.246: 24451 - 27032 | IV |
24 | MDP0000282003 | 9 | MdCPK24b | 2860 | 954 | 12 | 2 | MDC006465.419: 8202 - 16334 | IV |
25 | MDP0000297184 | 8 | MdCPK26a | 1685 | 571 | 6 | 3 | MDC012276.352: 7244 - 10346 | I |
26 | MDP0000457940 | 8 | MdCPK26b | 4152 | 1403 | 8 | 0 | MDC001323.383: 1559 - 7846 | I |
27 | MDP0000208913 | 2 | MdCPK28 | 1861 | 626 | 13 | 10 | MDC018730.149: 4526 - 9378 | III |
28 | MDP0000142398 | 12 | MdCPK29 | 1584 | 527 | 7 | 4 | MDC015573.110: 52421 - 55302 | II |
29 | MDP0000649508 | 15 | MdCPK32a | 2081 | 709 | 10 | 4 | MDC001801.279: 799 - 8644 | IV |
30 | MDP0000179069 | 14 | MdCPK32b | 2011 | 676 | 10 | 3 | MDC006959.379: 1716 - 6520 | IV |