Table 3 List of T3Es and T3SP identified in Xff 4834-R genome and their characteristics
T3E / T3SP | Synonyms | Function / features | accession | GC% | Flanking sequences: IS, ARNt, integrase |
|---|---|---|---|---|---|
Located on the chromosome | |||||
AvrBs2 | . | Glycerophosphoryl diester phosphodiesterase | XFF4834R_chr00460 | 63.60 | integrase |
XopA | Hpa1/HpaG | "Harpin," | XFF4834R_chr41750 | 60.00 | IS4 |
XopAD | . | SKWP repeat protein | XFF4834R_chr40870 | 66.40 | no |
XopAE | HpaF/HpaG | LRR protein | XFF4834R_chr38990 | 63.60 | tRNA-Arg |
XopAF | AvrXv3 | Unknown | XFF4834R_chr42650 | 49.00 | transposase mutator type |
XopAK | . | Unknown | XFF4834R_chr35620 | 58.60 | no |
XopAM | . | Unknown | XFF4834R_chr33550 | 65.30 | no |
XopC2 | . | Haloacid dehalogenase-like hydrolase | XFF4834R_chr33300 | 63.20 | no |
XopE1 | AvrXacE1 | Putative transglutaminase | XFF4834R_chr02600 | 63.40 | no |
XopF1 | Hpa4 | Unknown | XFF4834R_chr03180 | 63.60 | no |
XopF2 | . | Unknown | XFF4834R_chr18460 | 63.30 | no |
XopG | . | M27-family peptidase (Clostridium toxin) | XFF4834R_chr10930 | 51.10 | mutator type transposase |
XopI | . | F-box protein | XFF4834R_chr07620 | 65.10 | no |
XopJ5 | AvrXccB | Putative C55-family cysteine protease or Ser/Thr acetyltransferase (Clan CE) | XFF4834R_chr16310 | 59.40 | no |
XopK | . | Unknown | XFF4834R_chr15450 | Â | no |
XopL | XAC3090 | LRR protein | XFF4834R_chr15400 | 61.90 | no |
XopN | . | ARM/HEAT repeat | XFF4834R_chr18430 | 63.30 | no |
XopP1 | . | Unknown | XFF4834R_chr33320 | 61.60 | no |
XopP2 | - | Unknown | XFF4834R_chr33310 | 60.10 | no |
XopQ | . | Putative inosine-uridine nucleoside N-ribohydrolase | XFF4834R_chr42130 | 67.50 | no |
XopR | . | Unknown | XFF4834R_chr25420 | 66.50 | no |
XopT | . | Unknown | XFF4834R_chr23790 | 64.60 | IS3/IS911; transposase mutator type |
XopV | . | Unknown | XFF4834R_chr42980 | 62.90 | no |
XopX | . | Unknown | XFF4834R_chr42980 | 65.60 | no |
XopZ | . | Unknown | XFF4834R_chr21120 | 65.50 | recombination factor rarA |
Located on plasmids | |||||
XfuTAL1 | "Pth, TAL" | AvrBs3/PthA-type transcription activator; 31,5 repeats of 34 aa. RVDs: NI NN NN HD NI HD HD HD HD HD NI NG NI NG NI NN NG NN HD HD NF HD NI HD HD HD HD HD NG NG | XFF4834R_plb00200 | 66.80 | IS3; ISXac2; Tn3 fragment; ISXco11; IS3/IS911 |
XfuTAL2 | "Pth, TAL" | AvrBs3/PthA-type transcription activator; 16,5 repeats of 34 aa. RVDs: NI NG HD NG HD NI NG NI HY NN N- HD NG HY NN HD NG | XFF4834R_pla00470 | Â | Â |
XopC1 | . | Phosphoribosyl transferase domain and haloacid dehalogenase-like hydrolase | XFF4834R_plb00200 | 47.80 | Tn3 fragment; ISXco11 |
XopE3 | AvrXacE2 | Putative transglutaminase | XFF4834R_plb00200 | 59.40 | Tn3 fragment; ISXco11 |