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Table 1 Cytoskeleton-related genes differentially transcribed in compression (CW) and opposite wood (OW) formed in branches

From: Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism

Xylem tissues Differentially transcribed genes* Representing ESTs GenBank accession Log-2 ratios P-values
CW-spring Actin TWL22A2 FE523923 1.532 0.048
CW-spring Actin 3 MWL23B3 GO269503 0.905 0.003
CW-autumn Actin 3 JWLxF8 FE521083 0.574 0.033
CW-autumn Actin 7 JWEeC7 FE518833 2.150 0.048
CW-spring Actin 7 TWE23D12 FE523186 1.794 0.050
CW-spring Actin bundling protein ABP135 TWE5D1 FE523228 0.800 0.010
CW-autumn Actin depolymerizing factor MWE24D11 FE521861 2.167 0.034
CW-spring Actin depolymerizing factor MWE5G10 FE521693 1.772 0.047
CW-autumn Actin depolymerizing factor-like JWEqB11 FE518555 0.664 0.011
CW-spring Actin filament bundling protein P-115 JWL19E9 FE521315 1.676 0.048
CW-autumn Actin filament bundling protein P-115 JWL19E9 FE521315 1.539 0.016
CW-autumn Actin related protein 2 JWLfF5 FE519755 1.159 0.035
CW-autumn Actin related protein 3 JWEmB5 FE518964 1.211 0.040
CW-autumn Tubulin alpha JWEbH8 FE519649 1.942 0.049
CW-spring Tubulin alpha 1 JWEsG6 FE519115 1.580 0.033
CW-autumn Tubulin alpha 1 TWL9D10 FE524256 1.830 0.050
CW-spring Tubulin beta JWLlA9 FE519966 1.944 0.037
CW-autumn Tubulin beta 1 JWLwC2 FE520255 1.694 0.044
CW-spring Tubulin beta 1 JWLwC2 FE520255 1.706 0.010
CW-spring Tubulin beta 3 MWE31B9 FE521866 1.571 0.042
CW-spring Tubulin beta 6 MWL30D8 FE522772 1.340 0.047
CW-autumn Tubulin beta 6 JWLrC8 FE520019 1.557 0.032
CW-spring Tubulin beta 7 JWLhG4 FE520687 1.993 0.024
CW-spring Tubulin folding cofactor B TWL22B11 FE524340 2.023 0.050
CW-autumn Microtubial binding protein MWE30H10 FE521906 0.650 0.026
CW-autumn MAP-like MWE9A10 FE521409 1.479 0.009
CW-spring MAP kinase-like MWE31C11 FE521885 1.888 0.015
OW-spring Actin 2 TWE16C11 FE523366 -1.470 0.049
OW-autumn Actin 2 MWL29C3 FE522532 -2.139 0.049
OW-autumn Actin bundling protein ABP135 TWE5D1 FE523228 -1.162 0.019
OW-autumn Actin related protein 6 TWE4H5 FE523100 -2.163 0.042
OW-autumn Tubulin folding cofactor A MWL33E1 FE522629 -1.448 0.000
OW-spring MAP JWLlA3 FE520828 -1.777 0.043
OW-autumn MAP JWL11A8 FE521181 -1.328 0.043
OW-autumn MAP kinase JWEiD6 FE518418 -1.342 0.010
OW-autumn MAP kinase phosphatase MWE1B4 FE521481 -1.621 0.007
OW-spring MAPKK TWE5D10 FE523280 -1.982 0.014
OW-autumn MAPKK TWE5D10 FE523280 -1.914 0.034
  1. *MAP, microtubule-associated protein; MAPKK, mitogen-activated protein kinase kinase.
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