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Table 3 Genes related to cellulose and lignin biosynthesis differentially transcribed in compression (CW) and opposite wood (OW) formed in branches

From: Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism

Xylem tissues

Differentially transcribed genes*

Representing ESTs

GenBank accession

Log-2 ratios

P-values

CW-spring

PrCesA3

TWL7C2

FE524088

1.316

0.045

CW-autumn

PrCesA3

TWL1D5

FE524207

1.984

0.046

CW-autumn

PrCesA7

JWE3D1

FE518578

1.464

0.041

CW-spring

PrCesA11

TWL21B5

FE523881

1.336

0.041

CW-autumn

PrCesA11

TWL28A3

FE523830

1.867

0.038

CW-spring

PrCesA-like

JWLvB12

FE520241

1.661

0.016

CW-autumn

PrCesA-like

JWLvB12

FE520241

1.417

0.012

CW-spring

Sucrose synthase

TWL8B9

FE524247

1.467

0.038

CW-autumn

Sucrose synthase

JWEtG3

FE519171

2.153

0.045

CW-spring

Sucrose synthase 1

JWE5H8

FE519487

1.377

0.033

CW-spring

Callose synthase-like

TWL14D7

FE524183

0.933

0.028

CW-spring

Glycosyl transferase 48

JWLxB9

FE521086

1.444

0.037

CW-spring

Chorismate synthase

TWL12H4

FE524274

2.155

0.046

CW-autumn

Chorismate synthase

TWL12H4

FE524274

1.336

0.177

CW-spring

Chorismate mutase

MWE4C8

FE521447

1.308

0.010

CW-spring

Shikimate kinase 2

JWL17G12

FE520492

2.685

0.046

CW-spring

EPSPS

JWLbD8

FE519700

2.111

0.018

CW-autumn

EPSPS

JWLbD8

FE519700

1.906

0.040

CW-spring

DAHPS

MWE11H6

FE521953

1.295

0.048

CW-autumn

DAHPS

MWE11H6

FE521953

1.966

0.041

CW-spring

4CL

JWE8F8

FE519348

1.289

0.046

CW-autumn

4CL

JWEnE8

FE519597

1.830

0.046

CW-spring

C4H

TWL23G12

FE523933

1.547

0.047

CW-autumn

C4H

MWE8E8

FE522027

1.921

0.048

CW-spring

CCR-like

JWE3H12

FE518650

1.180

0.043

CW-spring

COMT

MWL29C12

FE522592

1.449

0.049

CW-autumn

COMT

MWE7C3

FE522592

1.571

0.014

CW-autumn

PAL2

JWL4F3

FE521295

1.635

0.050

CW-spring

Laccase 2

JWL22G2

FE520504

1.810

0.049

CW-autumn

Laccase 2

JWL22G2

FE520504

1.238

0.039

CW-spring

Laccase 4

TWL13F12

FE524173

1.616

0.070

CW-autumn

Methionine synthase

JWLuE3

FE520972

1.558

0.031

CW-autumn

Methionine synthase 2

JWEuE1

FE519234

1.663

0.049

CW-autumn

MetE

MWE9E1

GO269413

1.749

0.045

CW-spring

SAMS

TWL18G9

FE523865

1.552

0.044

CW-autumn

SAMDC

JWE8E2

FE519501

1.881

0.048

CW-spring

Dirigent-like protein pDIR3

JWLf10D9

FE519781

1.493

0.035

CW-autumn

Dirigent-like protein pDIR3

TWL26F6

FE524371

1.226

0.043

CW-autumn

Dirigent-like protein pDIR4

JWLwD4

FE520269

1.807

0.042

CW-autumn

Dirigent-like protein pDIR14

JWEdE1

FE518247

2.298

0.042

OW-autumn

PrCesA10

TWE21G7

FE523538

-2.497

0.041

OW-autumn

Glycosyl transferase 8-like

TWE16F7

FE523341

-1.532

0.048

OW-autumn

Glycosyl transferase NTGT5a

TWE13G1

FE523678

-1.638

0.047

OW-spring

COMT-like

JWLkA8

FE520785

-2.112

0.035

OW-spring

Peroxidase precursor

TWE24D10

FE523740

-1.376

0.030

OW-autumn

Peroxidase precursor

TWE27F5

FE523746

-1.774

0.032

OW-spring

Peroxidase PSYP1,Class III

MWL21F8

GO269502

-1.999

0.039

OW-autumn

Peroxidase PSYP1,Class III

MWL21F8

GO269502

-1.474

0.045

OW-autumn

Dirigent protein pDIR18

TWE21H12

FE523546

-0.636

0.021

  1. *PrCesA, Pinus radiata cellulose synthase; 4CL, 4-coumarate:CoA ligase; C4H, cinnamic acid 4-hydroxylase; CCR, cinnamoyl CoA reductase; COMT, caffeic acid ortho-methyltransferase; PAL, phenylalanine ammonia-lyase; DAHPS, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; EPSPS, 5-enolpyruvylshikimate 3-phosphate synthase; SAMS, S-adenosylmethionine synthetase; SAMDC, S-adenosylmethionine decarboxylase; MetE, cobalamin-independent methionine synthase.