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Table 3 Genes related to cellulose and lignin biosynthesis differentially transcribed in compression (CW) and opposite wood (OW) formed in branches

From: Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism

Xylem tissues Differentially transcribed genes* Representing ESTs GenBank accession Log-2 ratios P-values
CW-spring PrCesA3 TWL7C2 FE524088 1.316 0.045
CW-autumn PrCesA3 TWL1D5 FE524207 1.984 0.046
CW-autumn PrCesA7 JWE3D1 FE518578 1.464 0.041
CW-spring PrCesA11 TWL21B5 FE523881 1.336 0.041
CW-autumn PrCesA11 TWL28A3 FE523830 1.867 0.038
CW-spring PrCesA-like JWLvB12 FE520241 1.661 0.016
CW-autumn PrCesA-like JWLvB12 FE520241 1.417 0.012
CW-spring Sucrose synthase TWL8B9 FE524247 1.467 0.038
CW-autumn Sucrose synthase JWEtG3 FE519171 2.153 0.045
CW-spring Sucrose synthase 1 JWE5H8 FE519487 1.377 0.033
CW-spring Callose synthase-like TWL14D7 FE524183 0.933 0.028
CW-spring Glycosyl transferase 48 JWLxB9 FE521086 1.444 0.037
CW-spring Chorismate synthase TWL12H4 FE524274 2.155 0.046
CW-autumn Chorismate synthase TWL12H4 FE524274 1.336 0.177
CW-spring Chorismate mutase MWE4C8 FE521447 1.308 0.010
CW-spring Shikimate kinase 2 JWL17G12 FE520492 2.685 0.046
CW-spring EPSPS JWLbD8 FE519700 2.111 0.018
CW-autumn EPSPS JWLbD8 FE519700 1.906 0.040
CW-spring DAHPS MWE11H6 FE521953 1.295 0.048
CW-autumn DAHPS MWE11H6 FE521953 1.966 0.041
CW-spring 4CL JWE8F8 FE519348 1.289 0.046
CW-autumn 4CL JWEnE8 FE519597 1.830 0.046
CW-spring C4H TWL23G12 FE523933 1.547 0.047
CW-autumn C4H MWE8E8 FE522027 1.921 0.048
CW-spring CCR-like JWE3H12 FE518650 1.180 0.043
CW-spring COMT MWL29C12 FE522592 1.449 0.049
CW-autumn COMT MWE7C3 FE522592 1.571 0.014
CW-autumn PAL2 JWL4F3 FE521295 1.635 0.050
CW-spring Laccase 2 JWL22G2 FE520504 1.810 0.049
CW-autumn Laccase 2 JWL22G2 FE520504 1.238 0.039
CW-spring Laccase 4 TWL13F12 FE524173 1.616 0.070
CW-autumn Methionine synthase JWLuE3 FE520972 1.558 0.031
CW-autumn Methionine synthase 2 JWEuE1 FE519234 1.663 0.049
CW-autumn MetE MWE9E1 GO269413 1.749 0.045
CW-spring SAMS TWL18G9 FE523865 1.552 0.044
CW-autumn SAMDC JWE8E2 FE519501 1.881 0.048
CW-spring Dirigent-like protein pDIR3 JWLf10D9 FE519781 1.493 0.035
CW-autumn Dirigent-like protein pDIR3 TWL26F6 FE524371 1.226 0.043
CW-autumn Dirigent-like protein pDIR4 JWLwD4 FE520269 1.807 0.042
CW-autumn Dirigent-like protein pDIR14 JWEdE1 FE518247 2.298 0.042
OW-autumn PrCesA10 TWE21G7 FE523538 -2.497 0.041
OW-autumn Glycosyl transferase 8-like TWE16F7 FE523341 -1.532 0.048
OW-autumn Glycosyl transferase NTGT5a TWE13G1 FE523678 -1.638 0.047
OW-spring COMT-like JWLkA8 FE520785 -2.112 0.035
OW-spring Peroxidase precursor TWE24D10 FE523740 -1.376 0.030
OW-autumn Peroxidase precursor TWE27F5 FE523746 -1.774 0.032
OW-spring Peroxidase PSYP1,Class III MWL21F8 GO269502 -1.999 0.039
OW-autumn Peroxidase PSYP1,Class III MWL21F8 GO269502 -1.474 0.045
OW-autumn Dirigent protein pDIR18 TWE21H12 FE523546 -0.636 0.021
  1. *PrCesA, Pinus radiata cellulose synthase; 4CL, 4-coumarate:CoA ligase; C4H, cinnamic acid 4-hydroxylase; CCR, cinnamoyl CoA reductase; COMT, caffeic acid ortho-methyltransferase; PAL, phenylalanine ammonia-lyase; DAHPS, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; EPSPS, 5-enolpyruvylshikimate 3-phosphate synthase; SAMS, S-adenosylmethionine synthetase; SAMDC, S-adenosylmethionine decarboxylase; MetE, cobalamin-independent methionine synthase.
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