| Error-free | Error-containing |
---|
To RR | | To WG | To RR | | To WG |
---|
Mappability | 74.04% | ← | 72.52% | 74.41% | ← | 72.95% |
User time | 1m23s | ← | 4m18s | 1m20s | ← | 4m37s |
Accuracy | 100.00% | | 100.00% | 99.33% | ← | 97.92% |
- 100 k reads of length 50 bp are simulated from the RR genome. Mapping is done using BS-Seeker2 (Bowtie). Mapping to the reduced represented (RR) index is much faster than mapping to the whole genome (WG) index. For error-free samples, the mappability to RR is higher than WG by avoiding pseudo-multiple hits. For error-containing samples, mapping to the RR index will result in higher accuracy than mapping to the WG index. Arrows indicate the improvement directions.