From: BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
 | BS-Seeker2 | Bismark | BSMAP | |||
---|---|---|---|---|---|---|
WGBS | Bowtie2 | Bowtie | Bowtie2 | Bowtie | ||
 | local | e2e | (e2e) | |||
Simulation: error-free | ||||||
map | 91.65% | 91.50% | 91.65% | 87.78% | 91.65% | 91.81% |
acc | 100.00% | 100.00% | 100.00% | 100.00% | 100.00% | 100.00% |
Simulation: error-containing | ||||||
map | 91.62% | 90.51% | 91.69% | 86.90% | 91.64% | 91.90% |
acc | 99.22% | 99.73% | 99.82% | 99.86% | 99.80% | 99.82% |
Real data | ||||||
map | 83.80% | 72.94% | 71.89% | 70.31% | 73.15% | 72.84% |