From: Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit
 | Description | Gene ID | e-value* | FDR |
---|---|---|---|---|
MVA pathway | ACAT2 (Acetyl-CoA acetyltransferase2) | Cla015696 | 4e-172 | 0.0568 |
Cla010997 | 7e-169 | 0.0050 | ||
HMGS (Hydroxymethylglutaryl-CoA synthase) | Cla001148 | 4e-211 | 0.0594 | |
HMGR1 (3-Hydroxy-3-methylglutaryl-CoA reductase 1) | Cla001204 | 1e-251 | 0.1373 | |
Cla021910 | 2e-255 | 0.1581 | ||
MVK (Mevalonate kinase) | Cla005305 | 4e-079 | 0.2429 | |
Cla019880 | 9e-112 | 0.2853 | ||
PMK (Phosphomevalonate kinase) | Cla016251 | 2e-019 | 0.4039 | |
PMD (Diphosphomevalonate decarboxylase) | Cla020496 | 3e-084 | 0.2037 | |
IDI1 (Isopentenyl-diphosphate δ-isomerase1) | Cla009550 | 3e-110 | 0.0906 | |
IDI2 (Isopentenyl-diphosphate δ-isomerase2) | Cla007929 | 1e-113 | 0.7446 | |
GPS (Geranyl-diphosphate synthase) | Cla016321 | 2e-016 | 0.0124 | |
FPS1 (Farnesyl diphosphate synthase 1) | Cla011017 | 7e-169 | 0.0683 | |
Cla003330 | 7e-167 | 0.0076 | ||
MEP pathway | DXS (1-Deoxy-d-xylulose-5-phosphate synthase) | Cla009346 | 9e-053 | 0.0243 |
Cla009347 | 8e-153 | 0.0027 | ||
Cla009348 | 7e-072 | 0.0017 | ||
Cla022299 | 2e-220 | 0.1203 | ||
DXR (1-Deoxy-d-xylulose-5-phosphate reductoisomerase) | Cla019193 | 7e-227 | 0.2373 | |
MCT (2-C-Methyl-d-erythritol 4-phosphate cytidyltransferase) | Cla004566 | 6e-014 | 0.0036 | |
CMK ( 4-Diphosphocytidyl-2-C-methyl-d-erythritol kinase) | Cla011088 | 1e-134 | 0.0718 | |
MDS (2-C-Methyl-d-erythritol 2,4-cyclodiphosphate synthase) | Cla014654 | 5e-085 | 0.0442 | |
HDS (4-Hydroxy-3-methylbut-2-en-1-yl diphosphate synthase) | Cla005033 | 3e-120 | 0.0016 | |
HDR (4-Hydroxy-3-methylbut-2-enyl diphosphate reductase) | Cla010297 | 4e-121 | 0.0320 | |
Cla015963 | 2e-149 | 0.0028 | ||
GGPS (Geranylgeranyl diphosphate synthase) | Cla020121 | 2e-125 | 0.0360 | |
Carotenoid biosynthetic pathway | PSY (Phytoene synthase) | Cla009122 | 2e-228 | 0.0008 |
Cla005425 | 3e-125 | 0.0324 | ||
PDS (Phytoene desaturase) | Cla010898 | 1e-174 | 0.0046 | |
CRTISO (Carotene isomerase) | Cla017593 | 6e-256 | 0.0264 | |
ZDS (ζ-carotene desaturase) | Cla003751 | 3e-224 | 0.0077 | |
LCYB (Lycopene β-cyclase) | Cla005011 | 1e-207 | 0.1722 | |
LCYE (Lycopene ϵ-cyclase) | Cla016840 | 2e-214 | 0.0976 | |
CHYB (β-carotene hydroxylase) | Cla011420 | 6e-020 | 0.0025 | |
Cla006149 | 5e-019 | 0.0152 | ||
ZEP (Zeaxanthin epoxidase) | Cla020214 | 8e-275 | 0.0033 | |
VDE (Violaxanthin de-epoxidase) | Cla000667 | 7e-102 | 0.0525 | |
Carotenoid catabolism | NCED1 (9-cis-epoxycarotenoid dioxygenase 1) | Cla005404 | 1e-249 | 0.0016 |
Cla009779 | 8e-213 | 0.0187 | ||
CCD1 (Carotenoid 9,10(9',10')-cleavage dioxygenase 1) | Cla015245 | 4e-207 | 0.0030 |