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Table 2 Genes related to mevalonic acid (MVA), 2-C-methyl- d -erythritol-4-phosphate (MEP), carotenoid biosynthetic and catabolic pathways

From: Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit

 

Description

Gene ID

e-value*

FDR

MVA pathway

ACAT2 (Acetyl-CoA acetyltransferase2)

Cla015696

4e-172

0.0568

Cla010997

7e-169

0.0050

HMGS (Hydroxymethylglutaryl-CoA synthase)

Cla001148

4e-211

0.0594

HMGR1 (3-Hydroxy-3-methylglutaryl-CoA reductase 1)

Cla001204

1e-251

0.1373

Cla021910

2e-255

0.1581

MVK (Mevalonate kinase)

Cla005305

4e-079

0.2429

Cla019880

9e-112

0.2853

PMK (Phosphomevalonate kinase)

Cla016251

2e-019

0.4039

PMD (Diphosphomevalonate decarboxylase)

Cla020496

3e-084

0.2037

IDI1 (Isopentenyl-diphosphate δ-isomerase1)

Cla009550

3e-110

0.0906

IDI2 (Isopentenyl-diphosphate δ-isomerase2)

Cla007929

1e-113

0.7446

GPS (Geranyl-diphosphate synthase)

Cla016321

2e-016

0.0124

FPS1 (Farnesyl diphosphate synthase 1)

Cla011017

7e-169

0.0683

Cla003330

7e-167

0.0076

MEP pathway

DXS (1-Deoxy-d-xylulose-5-phosphate synthase)

Cla009346

9e-053

0.0243

Cla009347

8e-153

0.0027

Cla009348

7e-072

0.0017

Cla022299

2e-220

0.1203

DXR (1-Deoxy-d-xylulose-5-phosphate reductoisomerase)

Cla019193

7e-227

0.2373

MCT (2-C-Methyl-d-erythritol 4-phosphate cytidyltransferase)

Cla004566

6e-014

0.0036

CMK ( 4-Diphosphocytidyl-2-C-methyl-d-erythritol kinase)

Cla011088

1e-134

0.0718

MDS (2-C-Methyl-d-erythritol 2,4-cyclodiphosphate synthase)

Cla014654

5e-085

0.0442

HDS (4-Hydroxy-3-methylbut-2-en-1-yl diphosphate synthase)

Cla005033

3e-120

0.0016

HDR (4-Hydroxy-3-methylbut-2-enyl diphosphate reductase)

Cla010297

4e-121

0.0320

Cla015963

2e-149

0.0028

GGPS (Geranylgeranyl diphosphate synthase)

Cla020121

2e-125

0.0360

Carotenoid biosynthetic pathway

PSY (Phytoene synthase)

Cla009122

2e-228

0.0008

Cla005425

3e-125

0.0324

PDS (Phytoene desaturase)

Cla010898

1e-174

0.0046

CRTISO (Carotene isomerase)

Cla017593

6e-256

0.0264

ZDS (ζ-carotene desaturase)

Cla003751

3e-224

0.0077

LCYB (Lycopene β-cyclase)

Cla005011

1e-207

0.1722

LCYE (Lycopene ϵ-cyclase)

Cla016840

2e-214

0.0976

CHYB (β-carotene hydroxylase)

Cla011420

6e-020

0.0025

Cla006149

5e-019

0.0152

ZEP (Zeaxanthin epoxidase)

Cla020214

8e-275

0.0033

VDE (Violaxanthin de-epoxidase)

Cla000667

7e-102

0.0525

Carotenoid catabolism

NCED1 (9-cis-epoxycarotenoid dioxygenase 1)

Cla005404

1e-249

0.0016

Cla009779

8e-213

0.0187

CCD1 (Carotenoid 9,10(9',10')-cleavage dioxygenase 1)

Cla015245

4e-207

0.0030

  1. Genes were identified through Illumina Sequencing Technology in watermelon fruit using two biological replicas. In bold are indicated the genes differentially expressed during watermelon ripening with a FDR (False Discovery Rate) ≤ 0.05.
  2. *according to Swiss-Prot database.