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Table 2 Table shows SNPs identified as being significant in this study and genes (not associated with fatness) located 0.5 Mb upstream or downstream from each SNP, discovered through the interrogation of the Illumina SNP60 BeadChip

From: Genome wide analysis reveals single nucleotide polymorphisms associated with fatness and putative novel copy number variants in three pig breeds

Duroc

SNP ID

Genes upstream

Genes downstream

INRA0003205

SH3BGRL2, ELOVL4, TTK

LCA5, HMGN3

INRA0002667

-

MANEA

ALGA0010375

STRBP, GPR21, ZBTB6, RC3H2

CRB2, DENNDIA

MARC0026060

-

-

MARC0051272

-

-

INRA0005757

IFNB1, PTPLAD2, KIAA1797

MLLT3

ALGA0006852

NOX5

GLCE, KIF23, PAQR5

ASGA0003731

TTK, ELOVL4

SH3BGRL2

DRGA0002899

BBOX1, CCDC34, LIN7C, LGR4

SLC5A12, ANO3, MUC15

ALGA0019845

SLC1A4, RAB1A, CEP68

SERTAd2, AFTPH

ASGA0014296

PHF2, FAM120A

BARX1, PTPDC1

MARC0074041

UXS1, NCK2

FHL2

MARC0068661

FAM78B

UCK2

INRA0014911

TOX

-

MARC0005831

-

PEX2

ALGA0031998

-

-

ALGA0031986

-

PLEKHA5

DRGA0006714

DSC1

RNF125

ASGA0095121

GLTPD1, TTLL10

MIB2, CDK11A

ALGA0117693

EFS15, RNF11, TTC39A, CDKN2C

-

H3GA0024542

-

-

MARC0045989

CNOT6L, MRPL1

FRAS1, NPY2R

DIAS0001163

-

-

ALGA0115519

-

PHF14

MARC0022409

PAK1

INTS4, KCTD14, ALG8

MARC0001591

CD300LB, RAB37, NAT9, GRIN2C, FADS6

-

MARC0016326

RNF43, BZRAP1

SEPT4, TEX14

ALGA0066217

RAD51C

TRIM37

ALGA0066214

SUPT4H1, RNF43, BZRAP1

MTMR4, SEPT4, TEX14

ASGA0058594

RAP2B

P2RY1

H3GA0036520

RYBP

EIF4E3

ALGA0073528

-

C21orf7, BACH1

MARC0032428

GOLIM4

MECOM

ASGA0102446

PTX3, VEPH1

SHOX2, RSRC1

ALGA0122006

CD47, IFT57, HHLA2, MYH15

KIAA1524, DZIP3, RETNLB

DRGA0012091

-

RBMS3

ALGA0070937

LRRTM4

-

INRA0040988

OSTN, UTS2D, CCDC50

-

DRGA0012752

MBNL1

P2RY1

ALGA0109563

-

-

H3GA0040313

NID1, GPR137B, ERO1LB

GNG4, TBCE, B3GALNT2, GGPS1

ALGA0080178

MBL2

DKK1, PRKG1

ALGA0080086

-

-

ALGA0083515

-

-

ASGA0070192

MYO1B

OBFC2A, SDPR

MARC0015113

COPS7B, PDE6D, NMUR1, NCL

D1S3L2, ECEL1, CHRND, CHRHG

ALGA0085117

-

-

ASGA0095282

-

-

ALGA0094547

IDH3B, TMC2

STK35, PDYN

ASGA0075751

-

SPTLC3, TASP1

ASGA0075610

PLCB1, PLCB4

-

SLLW

SNP ID

Genes upstream

Genes downstream

ALGA0039930

LRRC1

C6orf142

ALGA0040140

COL21A1

-

ALGA0040529

GLO1

DNAH8

ASGA0032973

-

-

DRGA0015258

ATP5G3

-

ASGA0070042

ATP53G

-

ALGA0086180

-

HOXD11

MARC0049797

CCDC141

SESTD1

ASGA0070135

SESTD1

-

INRA0049850

SSFA2

PPP1R1C

ASGA0070147

DNAJC10

-

ALGA0115880

-

-

MARC0085425

-

AGPS

Titan

SNP ID

Genes upstream

Genes downstream

ASGA0014024

-

ABCC1

MARC0044718

-

-

ASGA0042741

FAM55D

-

ASGA0048928

PRKCQ

SFMBT2

MARC0069967

LARS2

-

DRGA0012769

MME

GMPS

ASGA0058709

-

TBL1XR1

DRGA0013970

RHOBTB1

-

ALGA0109681

GYPC

-

MARC0078259

-

DTD1