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Table 1 Total number of reads sequenced and mapped onto the Heinz 1706 reference genome after resequencing eight tomato accessions using Illumina Genome Analyser

From: Whole genome resequencing in tomato reveals variation associated with introgression and breeding events

Accession Cervil Plovdiv LA1420 Criollo Stupicke Ferum Levovil LA0147
Nb reads (million) 149.2 124.7 121.9 84.3 123.7 88.4 69.2 208.4
Nb nucleotides (Gigabases) 15.1 12.6 12.3 8.5 12.5 8.9 7.0 20.2
Depth 19.6 16.5 16.2 11.1 16.4 11.7 9.2 26.5
% sequences after cleaning 85.3 87.3 90.1 89.6 88.3 87.5 88.2 81.8
Depth after cleaning 13.3 12.2 12.5 8.1 12.0 8.2 6.7 16.6
% sequences mapped 95.4 97.1 97.1 98.2 98.2 98.5 95.9 98.8
% coverage (depth = 4) 88.8 88.6 88.9 81.1 90.5 82.2 72.7 92.3