Table 1 Total number of reads sequenced and mapped onto the Heinz 1706 reference genome after resequencing eight tomato accessions using Illumina Genome Analyser
Accession | Cervil | Plovdiv | LA1420 | Criollo | Stupicke | Ferum | Levovil | LA0147 |
|---|---|---|---|---|---|---|---|---|
Nb reads (million) | 149.2 | 124.7 | 121.9 | 84.3 | 123.7 | 88.4 | 69.2 | 208.4 |
Nb nucleotides (Gigabases) | 15.1 | 12.6 | 12.3 | 8.5 | 12.5 | 8.9 | 7.0 | 20.2 |
Depth | 19.6 | 16.5 | 16.2 | 11.1 | 16.4 | 11.7 | 9.2 | 26.5 |
% sequences after cleaning | 85.3 | 87.3 | 90.1 | 89.6 | 88.3 | 87.5 | 88.2 | 81.8 |
Depth after cleaning | 13.3 | 12.2 | 12.5 | 8.1 | 12.0 | 8.2 | 6.7 | 16.6 |
% sequences mapped | 95.4 | 97.1 | 97.1 | 98.2 | 98.2 | 98.5 | 95.9 | 98.8 |
% coverage (depth = 4) | 88.8 | 88.6 | 88.9 | 81.1 | 90.5 | 82.2 | 72.7 | 92.3 |