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Table 2 Sample of the resource STaRRRT

From: STaRRRT: a table of short tandem repeats in regulatory regions of the human genome

Chrom Chrom start Chrom end Strand refSeqId hgncSymbol Category tx Pos srStart srEnd Period Num repeats sr Length per Match A C G T Sequence
chr1 1102483 1102578 + NR_029639 MIR200B noncoding −586 1101897 1101928 6 5.2 31 92 19 80 0 0 CACCCC
chr1 1103242 1103332 + NR_029834 MIR200A noncoding −1345 1101897 1101928 6 5.2 31 92 19 80 0 0 CACCCC
chr1 1631377 1633247 + NR_002946 MMP23A coding −340 1631037 1631077 9 4.4 40 93 2 10 62 25 GTGTGCGGG
chr1 1950767 1962192 + NM_000815 GABRD coding −994 1949773 1949836 5 12.8 63 98 61 17 0 20 ATAAC
chr1 2487804 2495188 + NM_003820 TNFRSF14 coding 183 2487987 2488012 6 4.2 25 100 0 32 0 68 TTCTCT
chr1 2985741 3355185 + NM_022114 PRDM16 coding −121 2985620 2985645 3 8.3 25 100 0 32 68 0 GGC
chr1 3816967 3832011 + NR_024455 LOC100133612 noncoding −1887 3815080 3815118 3 12.7 38 100 68 31 0 0 AAC
chr1 6673755 6684093 + NM_153812 PHF13 coding −494 6673261 6673286 7 3.6 25 100 16 16 68 0 AGCGGGG
chr1 9352940 9429590 + NM_025106 SPSB1 coding −1705 9351235 9351260 1 25 25 100 0 0 0 100 T
chr1 9352940 9429590 + NM_025106 SPSB1 coding −157 9352783 9352812 7 4.1 29 100 0 72 27 0 CGCGCCC
  1. This simplified sample of STaRRRT shows the details for the first 10 STRs in STaRRRT. The number of columns have been reduced from 30 to 19 shown here due to size limitations. STaRRRT can be viewed in its entirety at http://www.newcastleinnovationhealth.com.au/STaRRRT.