Table 2 Sample of the resource STaRRRT
From: STaRRRT: a table of short tandem repeats in regulatory regions of the human genome
Chrom | Chrom start | Chrom end | Strand | refSeqId | hgncSymbol | Category | tx Pos | srStart | srEnd | Period | Num repeats | sr Length | per Match | A | C | G | T | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 1102483 | 1102578 | + | NR_029639 | MIR200B | noncoding | −586 | 1101897 | 1101928 | 6 | 5.2 | 31 | 92 | 19 | 80 | 0 | 0 | CACCCC |
chr1 | 1103242 | 1103332 | + | NR_029834 | MIR200A | noncoding | −1345 | 1101897 | 1101928 | 6 | 5.2 | 31 | 92 | 19 | 80 | 0 | 0 | CACCCC |
chr1 | 1631377 | 1633247 | + | NR_002946 | MMP23A | coding | −340 | 1631037 | 1631077 | 9 | 4.4 | 40 | 93 | 2 | 10 | 62 | 25 | GTGTGCGGG |
chr1 | 1950767 | 1962192 | + | NM_000815 | GABRD | coding | −994 | 1949773 | 1949836 | 5 | 12.8 | 63 | 98 | 61 | 17 | 0 | 20 | ATAAC |
chr1 | 2487804 | 2495188 | + | NM_003820 | TNFRSF14 | coding | 183 | 2487987 | 2488012 | 6 | 4.2 | 25 | 100 | 0 | 32 | 0 | 68 | TTCTCT |
chr1 | 2985741 | 3355185 | + | NM_022114 | PRDM16 | coding | −121 | 2985620 | 2985645 | 3 | 8.3 | 25 | 100 | 0 | 32 | 68 | 0 | GGC |
chr1 | 3816967 | 3832011 | + | NR_024455 | LOC100133612 | noncoding | −1887 | 3815080 | 3815118 | 3 | 12.7 | 38 | 100 | 68 | 31 | 0 | 0 | AAC |
chr1 | 6673755 | 6684093 | + | NM_153812 | PHF13 | coding | −494 | 6673261 | 6673286 | 7 | 3.6 | 25 | 100 | 16 | 16 | 68 | 0 | AGCGGGG |
chr1 | 9352940 | 9429590 | + | NM_025106 | SPSB1 | coding | −1705 | 9351235 | 9351260 | 1 | 25 | 25 | 100 | 0 | 0 | 0 | 100 | T |
chr1 | 9352940 | 9429590 | + | NM_025106 | SPSB1 | coding | −157 | 9352783 | 9352812 | 7 | 4.1 | 29 | 100 | 0 | 72 | 27 | 0 | CGCGCCC |