From: STaRRRT: a table of short tandem repeats in regulatory regions of the human genome
STaRRRT | Exon | Intron | ||||||
---|---|---|---|---|---|---|---|---|
Term | ID | Genes | Enrich | p-value | Enrich | p-value | Enrich | p-value |
Metabolism | ||||||||
Purine metabolism | 230 | 126 | 1.94 | 0.020 | - | - | 2.44 | 0.006 |
Glycine, serine and threonine metabolism | 260 | 53 | - | - | - | - | 3.33 | 0.006 |
Glycosaminoglycan degradation | 531 | 12 | - | - | 7.14 | 0.006 | - | - |
Inositol phosphate metabolism | 562 | 54 | 3.04 | 0.002 | - | - | 2.70 | 0.028 |
Glycan structures - biosynthesis 1 | 1030 | 40 | 3.24 | 0.005 | - | - | - | - |
Glycan structures - degradation | 1032 | 18 | - | - | 6.00 | 0.006 | - | - |
Development/Cell growth and death | ||||||||
Apoptosis | 4210 | 111 | 2.21 | 0.006 | 2.13 | 0.050 | 2.11 | 0.028 |
Dorso-ventral axis formation | 4320 | 80 | 2.03 | 0.048 | - | - | 2.73 | 0.007 |
Axon guidance | 4360 | 114 | 2.25 | 0.004 | 2.38 | 0.016 | 2.18 | 0.020 |
Signal transduction/Environmental information processing/Cell communication/Cell motility | ||||||||
Calcium signaling pathway | 4020 | 108 | 3.23 | 8.6E-07 | 2.50 | 0.012 | 2.30 | 0.015 |
Phosphatidylinositol signaling system | 4070 | 64 | 3.09 | 0.001 | 2.57 | 0.050 | 2.50 | 0.028 |
Wnt signaling pathway | 4310 | 126 | 2.32 | 0.002 | 2.14 | 0.029 | - | - |
VEGF signaling pathway | 4370 | 155 | 2.33 | 0.001 | 2.09 | 0.020 | 1.89 | 0.032 |
Focal adhesion | 4510 | 120 | 2.33 | 0.002 | 2.42 | 0.012 | 2.20 | 0.015 |
Adherens junction | 4520 | 166 | 1.76 | 0.031 | 2.50 | 0.002 | 2.30 | 0.004 |
Tight junction | 4530 | 101 | 1.95 | 0.038 | 2.68 | 0.007 | - | - |
Gap junction | 4540 | 116 | 2.32 | 0.002 | 2.19 | 0.032 | 2.41 | 0.007 |
Jak-STAT signaling pathway | 4630 | 140 | - | - | 2.73 | 0.002 | - | - |
Regulation of actin cytoskeleton | 4810 | 98 | 2.26 | 0.007 | 2.41 | 0.024 | 2.24 | 0.026 |
Immune system | ||||||||
Hematopoietic cell lineage | 4640 | 19 | - | - | - | - | 5.39 | 0.006 |
T cell receptor signaling pathway | 4660 | 167 | 1.89 | 0.011 | 2.50 | 0.002 | - | - |
B cell receptor signaling pathway | 4662 | 160 | 1.75 | 0.037 | 2.61 | 0.002 | - | - |
Leukocyte transendothelial migration | 4670 | 99 | 1.88 | 0.051 | 2.73 | 0.006 | 2.06 | 0.043 |
Nervous system | ||||||||
Long-term potentiation | 4720 | 125 | 2.34 | 0.002 | 2.17 | 0.028 | - | - |
Long-term depression | 4730 | 142 | 2.21 | 0.002 | 2.18 | 0.020 | 1.96 | 0.028 |
Endocrine system | ||||||||
Insulin signaling pathway | 4910 | 195 | 1.98 | 0.002 | 2.32 | 0.002 | 2.18 | 0.004 |
Adipocytokine signaling pathway | 4920 | 150 | - | - | 3.01 | 1.3E-04 | 1.96 | 0.028 |
Human diseases | ||||||||
Type II diabetes mellitus | 4930 | 22 | 3.16 | 0.051 | - | - | 5.33 | 0.004 |
Epithelial cell sig. in H. pylori infection | 5120 | 150 | 2.17 | 0.002 | 2.41 | 0.006 | 2.16 | 0.010 |
Colorectal cancer | 5210 | 82 | 2.00 | 0.051 | - | - | 2.68 | 0.008 |