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Table 5 The genes in the NCAPG-specific networks

From: A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle

 

Connectivity

GeneID

Official gene name*

BTA

Position [UMD 3.1]

NCAPG-specific sub-network (MCODE derived)§

NCAPG-specific network§

ACCN1

Acid-sensing (proton-gated) ion channel 2

19

16353062 - 17563070

13

21

ADAM15

ADAM metallopeptidase domain 15

3

15593181 - 15603336

10

23

AGTPBP1

ATP/GTP binding protein 1

8

80235082 - 80433151

8

13

ALK

Anaplastic lymphoma receptor tyrosine kinase

11

70321848 - 70646314

12

15

ARNTL2

Aryl hydrocarbon receptor nuclear translocator-like 2

5

82875251 - 82956797

0

9

ASB5

Ankyrin repeat and SOCS box containing 5

27

6692312 - 6736965

11

15

BRE

Brain and reproductive organ-expressed (TNFRSF1A modulator)

11

71403124 - 71826561

13

18

CAPN2

Calpain 2, (m/II) large subunit

16

27781671 - 27840011

0

11

DNAJC2

DnaJ (Hsp40) homolog, subfamily C, member 2

4

44769574 - 44803651

0

4

Drosophila

Single-minded homolog 1 (Drosophila)

9

50160697 - 50228919

0

12

ELMO1

Engulfment and cell motility 1

4

60356210 - 60838995

0

14

ELOVL5

ELOVL fatty acid elongase 5

23

25155742 - 25228997

0

37

FSHR

Follicle stimulating hormone receptor

11

31110744 - 31305197

13

16

GRIK2

Glutamate receptor, ionotropic, kainate 2

9

48857302 - 48925683

11

14

IGSF21

Immunoglobin superfamily, member 21

2

134864753 - 135060996

0

8

INSR

Insulin receptor

7

17279726 - 17421470

0

7

ITPKB

Inositol-trisphosphate 3-kinase B

16

30390092 - 30491749

0

12

JAZF1

AZF zinc finger 1

4

68444035 - 68773107

0

14

LPL

Lipoprotein lipase

8

67497758 - 67511231

0

4

MRVI1

Murine retrovirus integration site 1 homolog

15

42548308 - 42674631

13

22

MXD4

MAX dimerization protein 4

6

108490181 - 108501583

0

13

NCAPG

Non-SMC condensin I complex, subunit G

6

38765969 - 38812056

13

37

p600

Interleukin 13

7

23018546 - 23020546

0

11

PBX4

Pre-B-cell leukemia homeobox 4

7

3631055 - 3685738

11

17

PDE4D

Phosphodiesterase 4D, cAMP-specific

20

18748587 - 20322583

0

10

PLCB4

Phospholipase C, beta 4

13

2211089 - 2411116

0

15

POLR2G

Polymerase (RNA) II (DNA directed) polypeptide G

29

41777025 - 41780284

10

17

PPP1R3A

Protein phosphatase 1, regulatory subunit 3A

4

54866421 - 54906488

0

6

PTPRD

Protein tyrosine phosphatase, receptor type, D

8

36342559 - 36800975

13

27

RAB6IP1

RAB6 interacting protein 1

15

43965508 - 44059813

0

12

RBMS3

RNA binding motif, single stranded interacting protein 3

22

3898961 - 4695095

0

7

RGS7

Regulator of G-protein signaling 7

16

36478831 - 36695721

0

12

SCPEP1

Serine carboxypeptidase 1

19

8018816 - 8052591

0

8

SMG6

Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)

19

23660756 - 23858481

11

16

SPAG9

Sperm associated antigen 9

19

36343607 - 36422983

0

1

THSD7A

Thrombospondin, type I, domain containing 7A

4

19451228 - 19727594

0

14

ZBTB16

Zinc finger and BTB domain containing 16

15

24917133 - 25116350

0

10

  1. †Bos taurus chromosome.
  2. *In accordance with HUGO Gene Nomenclature Committee (HGNC) definitions.
  3. §Total number of genes to which the target gene is connected via a direct edge.