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Table 2 Publicly available S . Typhimurium genomes included in this study

From: Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

Isolate Accession Reference
14028S CP001363 [18]
UK-1 CP002614 [19]
D23580 FN424405 [20]
798 CP003386 [21]
ST4/74 CP002487 [22]
SL1344 NC_016810 [20]
LT2 AE006468 [23]
T000240 NC_016860 [24]
ST1660/06 AJTU01 [25]
LT2 ERS007491 [26]
LT6 ERS007492 [26]
LT1 ERS007487 [26]
LT3 ERS007489 [26]
SARA5 ERS007503 [26]
LT4 ERS007490 [26]
LT8 ERS007494 [26]
LT7 ERS007493 [26]
LT9 ERS007495 [26]
LT10 ERS007496 [26]
LT11 ERS007497 [26]
LT12 ERS007498 [26]
SARA1 ERS007499 [26]
SARA2 ERS007500 [26]
SARA3 ERS007501 [26]
SARA4 ERS007502 [26]
SARA9 ERS007507 [26]
SARA10 ERS007508 [26]
SARA11 ERS007509 [26]
SARA12 ERS007510 [26]
DT24 ERS007582 [26]
DT41B ERS007586 [26]
DT12 ERS007564 [26]
DT120 ERS007566 [26]
DT135 ERS007567 [26]
DT177 ERS007572 [26]
DT191A ERS007574 [26]
DT193 ERS007576 [26]
DT195 ERS007578 [26]
DT2B ERS007580 [26]
U302 ERS007606 [26]
U310 ERS007608 [26]
DT56 ERS007588 [26]
DT7 ERS007590 [26]
DT8 ERS007592 [26]
DT97 ERS007594 [26]
DT99 ERS007596 [26]
DT1 ERS007598 [26]
U276 ERS007600 [26]
U277 ERS007602 [26]
U288 ERS007604 [26]
U313 ERS007611 [26]
U319 ERS007613 [26]
DT104 ERS007562 [26]