Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

Table 4 IncI1 plasmid sequences analysed in this study

Plasmid	Host bacteria	Source	MLST	Accession	Reference
P9	Shigella sonnei	-	ST11	AB021078	[28]
R64	Salmonella Typhimurium	-	ST13	AP005147	[29]
pSE11-1	Escherichia coli	Human	ST14	AP009241	[30]
R621a	Salmonella Typhimurium	-	Novel	AP011954	[31]
SL476	Salmonella Heidelberg	Turkey	ST15	CP001118	[32]
CVM29188	Salmonella Kentucky	Chicken	ST12	CP001121	[33]
pRK1	Escherichia coli	Soil	Novel	CP002186	[34]
TY474p2	Salmonella Typhimurium	-	ST27	CP002489	[22]
pEKO1101	Escherichia coli	Human	Novel	CP002517	[35]
pUKMNK88_91	Escherichia coli	Pork	ST19	CP002731	[36]
pESBL-EA11	Escherichia coli	Human	ST31	CP003290	[37]
pEK204	Escherichia coli	Human	ST16	EU935740	[38]
p746	Escherichia coli	Human	Novel	FN822748	[39]
pEC_Bactec	Escherichia coli	Horse	ST31	GU371927	[40]
pKHSB1	Shigella sonnei	-	ST16	HF572032	[41]
pND11_107	Escherichia coli	Human	ST69	HQ114281	[42]
pND12_96	Escherichia coli	Human	ST19	HQ114282	[42]
pCS0010A_95	Salmonella Kentucky	Chicken	ST7	HQ114283	[42]
pSH1148_107	Salmonella Heidelberg	-	ST26	JN983049	[43]
Plm	Escherichia coli	-	Novel	JQ901381	[44]
pSD107	Salmonella Derby	Pork	ST26	JX566770	[45]
pNF1358	Salmonella Thompson	Human	ST11	NC_019011	[46]
pSTM2	Salmonella Typhimurium	Farm	ST7	KF290378	This study
pSTM7	Salmonella Typhimurium	Human	ST3	KF290377	This study

ISSN: 1471-2164