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Table 3 Higher level SCOP annotation for the predicted genes from the adult Musca domestica transcriptome based on sequence homology to Drosophila melanogaster §

From: A whole transcriptomal linkage analysis of gene co-regulation in insecticide resistant house flies, Musca domestica

General function Detailed function Superfamilies Predicted genes
Metabolism Amino acids metabolism /transport 6 17
  Carbohydrate metabolism /transport 11 94
  Coenzyme metabolism /transport 13 45
  Electron transfer 7 28
  Energy 23 45
  Lipid metabolism /transport 4 18
  Nitrogen metabolism /transport 1 2
  Nucleotide metabolism /transport 14 74
  Other enzymes 51 344
  Photosynthesis 1 2
  Polysaccharide metabolism /transport 2 19
  Redox 28 180
  Secondary metabolism 6 68
  Transferases 14 143
Regulation DNA-binding 32 218
  Kinases/phosphatases 7 245
  Other regulatory function 5 12
  Receptor activity 2 5
  RNA binding, metabolism /transport 12 113
  Signal transduction 30 301
Information Chromatin structure 4 4
  DNA replication/repair 15 141
  RNA processing 6 25
  Transcription 7 17
  Translation 44 77
Extra-cellular processes Blood clotting 1 13
  Cell adhesion 18 101
  Immune response 4 22
  Toxins/defense 2 5
Intra-cellular processes Cell cycle, Apoptosis 10 26
  Cell motility 11 38
  Ion metabolism /transport 13 173
  Phospholipid metabolism /transport 4 36
  Proteases 21 304
  Protein modification 15 105
  Transport 22 118
General General 12 348
  Ion binding 1 6
  Ligand binding 1 4
  Protein interaction 19 178
  Small molecule binding 11 403
Other Unknown function 26 75
  Viral proteins 1 4
NONA not annotated 1 1963
  TOTAL 537 6159
  1. §SCOP Superfamily annotation for D. melanogaster (v. 66_539) http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/gen_list.cgi?genome=dd.