Table 3 Higher level SCOP annotation for the predicted genes from the adult Musca domestica transcriptome based on sequence homology to Drosophila melanogaster ^§

Metabolism

Amino acids metabolism /transport

6

17

Carbohydrate metabolism /transport

11

94

Coenzyme metabolism /transport

13

45

Electron transfer

7

28

Energy

23

45

Lipid metabolism /transport

4

18

Nitrogen metabolism /transport

1

2

Nucleotide metabolism /transport

14

74

Other enzymes

51

344

Photosynthesis

1

2

Polysaccharide metabolism /transport

2

19

Redox

28

180

Secondary metabolism

6

68

Transferases

14

143

Regulation

DNA-binding

32

218

Kinases/phosphatases

7

245

Other regulatory function

5

12

Receptor activity

2

5

RNA binding, metabolism /transport

12

113

Signal transduction

30

301

Information

Chromatin structure

4

4

DNA replication/repair

15

141

RNA processing

6

25

Transcription

7

17

Translation

44

77

Extra-cellular processes

Blood clotting

1

13

Cell adhesion

18

101

Immune response

4

22

Toxins/defense

2

5

Intra-cellular processes

Cell cycle, Apoptosis

10

26

Cell motility

11

38

Ion metabolism /transport

13

173

Phospholipid metabolism /transport

4

36

Proteases

21

304

Protein modification

15

105

Transport

22

118

General

General

12

348

Ion binding

1

6

Ligand binding

1

4

Protein interaction

19

178

Small molecule binding

11

403

Other

Unknown function

26

75

Viral proteins

1

4

NONA

not annotated

1

1963

TOTAL

537

6159